Hb_001314_050

Information

Type -
Description -
Location Contig1314: 205560-213113
Sequence    

Annotation

kegg
ID rcu:RCOM_0494110
description eukaryotic translation initiation factor, putative
nr
ID XP_012067122.1
description PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
swissprot
ID P56286
description Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif211 PE=1 SV=1
trembl
ID A0A067LCB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01918 PE=4 SV=1
Gene Ontology
ID GO:0005850
description eukaryotic translation initiation factor 2 subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09170: 205847-213286
cDNA
(Sanger)
(ID:Location)		 044_K17.ab1: 207746-213286

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001314_050 0.0 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
2 Hb_000392_430 0.0480784089 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
3 Hb_000111_320 0.0604313494 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
4 Hb_031862_100 0.0642694424 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001671_100 0.0644907871 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
6 Hb_005914_170 0.0669943221 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
7 Hb_001189_070 0.070112522 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
8 Hb_000948_160 0.0714662088 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
9 Hb_000078_120 0.0715955199 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
10 Hb_010964_040 0.073195443 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
11 Hb_000072_320 0.0767971793 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
12 Hb_001016_120 0.0769364812 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
13 Hb_007416_120 0.0771565343 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
14 Hb_000310_090 0.077607666 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
15 Hb_000749_190 0.0779627017 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
16 Hb_000095_080 0.0784675782 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
17 Hb_004567_090 0.0791641128 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
18 Hb_001386_040 0.0793740097 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
19 Hb_008847_030 0.0800283351 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
20 Hb_007676_080 0.080045146 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_001314_050 Hb_001314_050 Hb_000392_430 Hb_000392_430 Hb_001314_050--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_001314_050--Hb_000111_320 Hb_031862_100 Hb_031862_100 Hb_001314_050--Hb_031862_100 Hb_001671_100 Hb_001671_100 Hb_001314_050--Hb_001671_100 Hb_005914_170 Hb_005914_170 Hb_001314_050--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_001314_050--Hb_001189_070 Hb_000392_430--Hb_000111_320 Hb_000392_430--Hb_001671_100 Hb_002811_180 Hb_002811_180 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000466_140 Hb_000466_140 Hb_000392_430--Hb_000466_140 Hb_000111_320--Hb_000466_140 Hb_001247_310 Hb_001247_310 Hb_000111_320--Hb_001247_310 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_000111_320--Hb_002811_180 Hb_001386_040 Hb_001386_040 Hb_031862_100--Hb_001386_040 Hb_015934_070 Hb_015934_070 Hb_031862_100--Hb_015934_070 Hb_031862_100--Hb_001189_070 Hb_006907_130 Hb_006907_130 Hb_031862_100--Hb_006907_130 Hb_031862_100--Hb_005914_170 Hb_007416_120 Hb_007416_120 Hb_001671_100--Hb_007416_120 Hb_001876_050 Hb_001876_050 Hb_001671_100--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_001671_100--Hb_001999_310 Hb_002232_360 Hb_002232_360 Hb_001671_100--Hb_002232_360 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_011344_120 Hb_011344_120 Hb_005914_170--Hb_011344_120 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_001189_070--Hb_011344_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5558 27.6854 36.1426 53.943 38.224 52.397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.054 72.3314 48.1472 71.3918 54.6904

CAGE analysis