Hb_001189_070

Information

Type -
Description -
Location Contig1189: 54523-58444
Sequence    

Annotation

kegg
ID rcu:RCOM_1341440
description U3 small nucleolar ribonucleoprotein protein imp4, putative
nr
ID XP_012088006.1
description PREDICTED: ribosome production factor 1 [Jatropha curcas]
swissprot
ID Q8AVP1
description Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1
trembl
ID A0A067JNZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25122 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ribosome production factor 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05586: 54578-58444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_070 0.0 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
2 Hb_008841_020 0.059430297 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
3 Hb_000310_090 0.0604379424 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
4 Hb_000347_240 0.0619661777 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
5 Hb_031862_100 0.0651556628 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_011344_120 0.0696356857 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
7 Hb_001314_050 0.070112522 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
8 Hb_000483_300 0.0710085302 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
9 Hb_001386_040 0.0730047395 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
10 Hb_000069_720 0.073608064 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
11 Hb_006573_190 0.0740616211 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
12 Hb_001828_150 0.0748423607 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
13 Hb_000081_160 0.0750728017 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
14 Hb_007928_030 0.075211105 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
15 Hb_002518_210 0.0756927332 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
16 Hb_000948_160 0.0757028563 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
17 Hb_008616_050 0.0769816223 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
18 Hb_001489_090 0.0778465814 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
19 Hb_000179_270 0.0780966134 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
20 Hb_004545_110 0.0791627877 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001189_070 Hb_001189_070 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050 Hb_001828_150 Hb_001828_150 Hb_008841_020--Hb_001828_150 Hb_000599_250 Hb_000599_250 Hb_008841_020--Hb_000599_250 Hb_000200_020 Hb_000200_020 Hb_008841_020--Hb_000200_020 Hb_006478_020 Hb_006478_020 Hb_008841_020--Hb_006478_020 Hb_001489_080 Hb_001489_080 Hb_008841_020--Hb_001489_080 Hb_001168_020 Hb_001168_020 Hb_000310_090--Hb_001168_020 Hb_025098_010 Hb_025098_010 Hb_000310_090--Hb_025098_010 Hb_002289_080 Hb_002289_080 Hb_000310_090--Hb_002289_080 Hb_086085_020 Hb_086085_020 Hb_000310_090--Hb_086085_020 Hb_000310_090--Hb_001314_050 Hb_000483_300 Hb_000483_300 Hb_000347_240--Hb_000483_300 Hb_004545_110 Hb_004545_110 Hb_000347_240--Hb_004545_110 Hb_001489_090 Hb_001489_090 Hb_000347_240--Hb_001489_090 Hb_006573_190 Hb_006573_190 Hb_000347_240--Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_000347_240--Hb_000566_120 Hb_001386_040 Hb_001386_040 Hb_031862_100--Hb_001386_040 Hb_015934_070 Hb_015934_070 Hb_031862_100--Hb_015934_070 Hb_031862_100--Hb_001314_050 Hb_006907_130 Hb_006907_130 Hb_031862_100--Hb_006907_130 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_007928_030 Hb_007928_030 Hb_011344_120--Hb_007928_030 Hb_011344_120--Hb_005914_170 Hb_009787_030 Hb_009787_030 Hb_011344_120--Hb_009787_030 Hb_004108_220 Hb_004108_220 Hb_011344_120--Hb_004108_220 Hb_011344_120--Hb_000347_240 Hb_000392_430 Hb_000392_430 Hb_001314_050--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_001314_050--Hb_000111_320 Hb_001671_100 Hb_001671_100 Hb_001314_050--Hb_001671_100 Hb_001314_050--Hb_005914_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.87787 5.33056 9.73932 15.9997 7.53272 10.0472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8729 17.5322 9.66199 13.5379 12.9516

CAGE analysis