Hb_004108_220

Information

Type -
Description -
Location Contig4108: 181531-193546
Sequence    

Annotation

kegg
ID rcu:RCOM_0558730
description mRNA capping enzyme, putative (EC:3.1.3.33)
nr
ID XP_012092268.1
description PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
swissprot
ID O55236
description mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1
trembl
ID A0A067JPL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mrna-capping enzyme-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40589: 181548-184444 , PASA_asmbl_40591: 183715-183887 , PASA_asmbl_40592: 185183-193346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_220 0.0 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
2 Hb_002301_150 0.0651472154 - - Drought-responsive family protein [Theobroma cacao]
3 Hb_005588_060 0.0654197406 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
4 Hb_149985_010 0.0666851413 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
5 Hb_168978_010 0.0678989565 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
6 Hb_000365_270 0.0685849895 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
7 Hb_012022_040 0.0694298373 - - Protein SIS1, putative [Ricinus communis]
8 Hb_000359_060 0.0718182556 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
9 Hb_003058_120 0.0721746108 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
10 Hb_002045_070 0.073334301 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
11 Hb_023001_040 0.07360329 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
12 Hb_001278_100 0.0750536307 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
13 Hb_089032_030 0.0760709405 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
14 Hb_000510_300 0.0764170928 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
15 Hb_000220_100 0.0774018252 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
16 Hb_004109_220 0.0798570366 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
17 Hb_000783_010 0.0800695602 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
18 Hb_011344_120 0.0801733333 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
19 Hb_004157_050 0.0812122455 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
20 Hb_033594_080 0.0824489933 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_220 Hb_004108_220 Hb_002301_150 Hb_002301_150 Hb_004108_220--Hb_002301_150 Hb_005588_060 Hb_005588_060 Hb_004108_220--Hb_005588_060 Hb_149985_010 Hb_149985_010 Hb_004108_220--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_004108_220--Hb_168978_010 Hb_000365_270 Hb_000365_270 Hb_004108_220--Hb_000365_270 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040 Hb_008013_050 Hb_008013_050 Hb_002301_150--Hb_008013_050 Hb_003502_060 Hb_003502_060 Hb_002301_150--Hb_003502_060 Hb_000030_030 Hb_000030_030 Hb_002301_150--Hb_000030_030 Hb_006846_130 Hb_006846_130 Hb_002301_150--Hb_006846_130 Hb_002301_150--Hb_168978_010 Hb_003058_120 Hb_003058_120 Hb_005588_060--Hb_003058_120 Hb_002936_010 Hb_002936_010 Hb_005588_060--Hb_002936_010 Hb_006570_080 Hb_006570_080 Hb_005588_060--Hb_006570_080 Hb_000173_280 Hb_000173_280 Hb_005588_060--Hb_000173_280 Hb_023001_040 Hb_023001_040 Hb_005588_060--Hb_023001_040 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_005054_110 Hb_005054_110 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_168978_010--Hb_000359_060 Hb_000260_350 Hb_000260_350 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_168978_010--Hb_149985_010 Hb_168978_010--Hb_000030_030 Hb_000603_160 Hb_000603_160 Hb_000365_270--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000365_270--Hb_005653_070 Hb_053709_050 Hb_053709_050 Hb_000365_270--Hb_053709_050 Hb_005563_070 Hb_005563_070 Hb_000365_270--Hb_005563_070 Hb_000365_270--Hb_006846_130 Hb_000856_010 Hb_000856_010 Hb_012022_040--Hb_000856_010 Hb_001278_100 Hb_001278_100 Hb_012022_040--Hb_001278_100 Hb_012022_040--Hb_004109_220 Hb_012022_040--Hb_149985_010 Hb_000221_190 Hb_000221_190 Hb_012022_040--Hb_000221_190 Hb_000928_070 Hb_000928_070 Hb_012022_040--Hb_000928_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00896 3.52442 3.78183 6.68893 1.86948 3.0181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.74487 6.24118 3.96669 4.46412 3.36848

CAGE analysis