Hb_000365_270

Information

Type -
Description -
Location Contig365: 252450-254318
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14880g
description POPTRDRAFT_577234; hypothetical protein
nr
ID XP_012090978.1
description PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
swissprot
ID P85192
description Unknown protein 1 OS=Helianthus annuus PE=1 SV=1
trembl
ID A0A067JDC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00614 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37590: 252489-254246 , PASA_asmbl_37591: 252489-253861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_270 0.0 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
2 Hb_004108_220 0.0685849895 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
3 Hb_000603_160 0.0703977727 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
4 Hb_005653_070 0.0843237201 - - K+ transport growth defect-like protein [Hevea brasiliensis]
5 Hb_053709_050 0.08519256 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_005563_070 0.08561017 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
7 Hb_006846_130 0.0865913477 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
8 Hb_002045_070 0.0866732308 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
9 Hb_000086_140 0.0870987542 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
10 Hb_000220_100 0.0871914367 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
11 Hb_000733_200 0.0877349408 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
12 Hb_005162_090 0.0885772547 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
13 Hb_001728_040 0.0898234395 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
14 Hb_004607_090 0.0901689815 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
15 Hb_000505_130 0.0914921864 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
16 Hb_000069_640 0.0919215483 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
17 Hb_005914_110 0.0927482925 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
18 Hb_000608_050 0.0929328795 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
19 Hb_001141_420 0.0937699262 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
20 Hb_000130_270 0.0953412833 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000365_270 Hb_000365_270 Hb_004108_220 Hb_004108_220 Hb_000365_270--Hb_004108_220 Hb_000603_160 Hb_000603_160 Hb_000365_270--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000365_270--Hb_005653_070 Hb_053709_050 Hb_053709_050 Hb_000365_270--Hb_053709_050 Hb_005563_070 Hb_005563_070 Hb_000365_270--Hb_005563_070 Hb_006846_130 Hb_006846_130 Hb_000365_270--Hb_006846_130 Hb_002301_150 Hb_002301_150 Hb_004108_220--Hb_002301_150 Hb_005588_060 Hb_005588_060 Hb_004108_220--Hb_005588_060 Hb_149985_010 Hb_149985_010 Hb_004108_220--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_004108_220--Hb_168978_010 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040 Hb_000603_160--Hb_005563_070 Hb_002572_020 Hb_002572_020 Hb_000603_160--Hb_002572_020 Hb_189216_010 Hb_189216_010 Hb_000603_160--Hb_189216_010 Hb_001141_420 Hb_001141_420 Hb_000603_160--Hb_001141_420 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_005653_070--Hb_189216_010 Hb_001728_040 Hb_001728_040 Hb_005653_070--Hb_001728_040 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_000069_640 Hb_000069_640 Hb_005653_070--Hb_000069_640 Hb_001633_090 Hb_001633_090 Hb_053709_050--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_053709_050--Hb_007850_030 Hb_006637_030 Hb_006637_030 Hb_053709_050--Hb_006637_030 Hb_053709_050--Hb_000603_160 Hb_002693_030 Hb_002693_030 Hb_053709_050--Hb_002693_030 Hb_053709_050--Hb_189216_010 Hb_005563_070--Hb_189216_010 Hb_000704_030 Hb_000704_030 Hb_005563_070--Hb_000704_030 Hb_005563_070--Hb_001141_420 Hb_005162_090 Hb_005162_090 Hb_005563_070--Hb_005162_090 Hb_005563_070--Hb_002572_020 Hb_006846_130--Hb_002301_150 Hb_000076_220 Hb_000076_220 Hb_006846_130--Hb_000076_220 Hb_000130_270 Hb_000130_270 Hb_006846_130--Hb_000130_270 Hb_006573_190 Hb_006573_190 Hb_006846_130--Hb_006573_190 Hb_003582_060 Hb_003582_060 Hb_006846_130--Hb_003582_060 Hb_001931_010 Hb_001931_010 Hb_006846_130--Hb_001931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.69351 8.2555 11.96 16.9807 3.25826 5.69764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.69046 13.9751 8.6574 7.643 7.96283

CAGE analysis