Hb_004607_090

Information

Type -
Description -
Location Contig4607: 60529-61302
Sequence    

Annotation

kegg
ID rcu:RCOM_1577350
description hypothetical protein
nr
ID XP_012089970.1
description PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
swissprot
ID Q2RYF4
description Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=ccmE PE=3 SV=1
trembl
ID A0A067JPZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25901 PE=3 SV=1
Gene Ontology
ID GO:0005886
description transmembrane protein g1p-related 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_090 0.0 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
2 Hb_000983_050 0.0701133814 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_007472_070 0.0710474807 - - cir, putative [Ricinus communis]
4 Hb_000603_160 0.0749872938 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
5 Hb_000087_070 0.077408192 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
6 Hb_000300_270 0.0793056874 - - cationic amino acid transporter, putative [Ricinus communis]
7 Hb_005162_090 0.0799936394 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
8 Hb_004705_170 0.080321274 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
9 Hb_002572_020 0.0833958628 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
10 Hb_000347_250 0.0868576917 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
11 Hb_000365_270 0.0901689815 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
12 Hb_002110_080 0.0902388291 - - FH interacting protein 1 [Theobroma cacao]
13 Hb_000384_070 0.0904283942 - - conserved hypothetical protein [Ricinus communis]
14 Hb_023344_150 0.0909122171 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
15 Hb_001141_420 0.0909947677 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
16 Hb_023313_030 0.0917498801 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004990_010 0.0917666459 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
18 Hb_012022_040 0.0919383742 - - Protein SIS1, putative [Ricinus communis]
19 Hb_000215_300 0.092114292 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
20 Hb_000256_150 0.0928061516 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004607_090 Hb_004607_090 Hb_000983_050 Hb_000983_050 Hb_004607_090--Hb_000983_050 Hb_007472_070 Hb_007472_070 Hb_004607_090--Hb_007472_070 Hb_000603_160 Hb_000603_160 Hb_004607_090--Hb_000603_160 Hb_000087_070 Hb_000087_070 Hb_004607_090--Hb_000087_070 Hb_000300_270 Hb_000300_270 Hb_004607_090--Hb_000300_270 Hb_005162_090 Hb_005162_090 Hb_004607_090--Hb_005162_090 Hb_023344_150 Hb_023344_150 Hb_000983_050--Hb_023344_150 Hb_011360_050 Hb_011360_050 Hb_000983_050--Hb_011360_050 Hb_002982_020 Hb_002982_020 Hb_000983_050--Hb_002982_020 Hb_000367_090 Hb_000367_090 Hb_000983_050--Hb_000367_090 Hb_000046_170 Hb_000046_170 Hb_000983_050--Hb_000046_170 Hb_004705_170 Hb_004705_170 Hb_007472_070--Hb_004705_170 Hb_000778_010 Hb_000778_010 Hb_007472_070--Hb_000778_010 Hb_000699_150 Hb_000699_150 Hb_007472_070--Hb_000699_150 Hb_000215_300 Hb_000215_300 Hb_007472_070--Hb_000215_300 Hb_000347_250 Hb_000347_250 Hb_007472_070--Hb_000347_250 Hb_006059_040 Hb_006059_040 Hb_007472_070--Hb_006059_040 Hb_005563_070 Hb_005563_070 Hb_000603_160--Hb_005563_070 Hb_002572_020 Hb_002572_020 Hb_000603_160--Hb_002572_020 Hb_189216_010 Hb_189216_010 Hb_000603_160--Hb_189216_010 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_001141_420 Hb_001141_420 Hb_000603_160--Hb_001141_420 Hb_000179_270 Hb_000179_270 Hb_000087_070--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_000087_070--Hb_002272_270 Hb_001269_190 Hb_001269_190 Hb_000087_070--Hb_001269_190 Hb_000840_200 Hb_000840_200 Hb_000087_070--Hb_000840_200 Hb_003878_150 Hb_003878_150 Hb_000087_070--Hb_003878_150 Hb_000049_020 Hb_000049_020 Hb_000300_270--Hb_000049_020 Hb_002046_160 Hb_002046_160 Hb_000300_270--Hb_002046_160 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_002883_030 Hb_002883_030 Hb_000300_270--Hb_002883_030 Hb_004452_110 Hb_004452_110 Hb_000300_270--Hb_004452_110 Hb_000345_160 Hb_000345_160 Hb_000300_270--Hb_000345_160 Hb_062226_130 Hb_062226_130 Hb_005162_090--Hb_062226_130 Hb_000738_020 Hb_000738_020 Hb_005162_090--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_005162_090--Hb_000869_080 Hb_139294_010 Hb_139294_010 Hb_005162_090--Hb_139294_010 Hb_012022_040 Hb_012022_040 Hb_005162_090--Hb_012022_040 Hb_000221_190 Hb_000221_190 Hb_005162_090--Hb_000221_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87159 4.1473 3.91434 7.37037 2.39228 2.86511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52639 4.99079 2.49993 3.12358 4.21569

CAGE analysis