Hb_002982_020

Information

Type -
Description -
Location Contig2982: 15612-18613
Sequence    

Annotation

kegg
ID rcu:RCOM_0661410
description ER lumen protein retaining receptor, putative
nr
ID XP_012084391.1
description PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
swissprot
ID O76767
description ER lumen protein-retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1
trembl
ID A0A067JXP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19598 PE=4 SV=1
Gene Ontology
ID GO:0016021
description er lumen protein-retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31167: 14779-15520 , PASA_asmbl_31168: 15699-18600 , PASA_asmbl_31169: 16541-18600
cDNA
(Sanger)
(ID:Location)		 027_A05.ab1: 15701-17458

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002982_020 0.0 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
2 Hb_011360_050 0.0602576306 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
3 Hb_001269_380 0.0747970209 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
4 Hb_012092_050 0.0756348921 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
5 Hb_006452_120 0.0778953353 - - PREDICTED: protein FAM188A [Jatropha curcas]
6 Hb_000778_010 0.0811398214 - - hypothetical protein [Bacillus subtilis]
7 Hb_001221_430 0.0830639616 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
8 Hb_002728_080 0.0830825089 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000460_080 0.0834465422 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
10 Hb_001329_200 0.0843693308 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
11 Hb_004705_170 0.0844903305 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
12 Hb_000089_180 0.0847546101 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
13 Hb_000802_090 0.0847924656 - - ornithine aminotransferase, putative [Ricinus communis]
14 Hb_000983_050 0.0852613658 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_004037_020 0.0852754021 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
16 Hb_003544_030 0.0853399465 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
17 Hb_016172_030 0.085396115 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
18 Hb_003688_180 0.0855815837 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
19 Hb_007839_020 0.0859640648 - - conserved hypothetical protein [Ricinus communis]
20 Hb_017387_010 0.0875149347 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]

Gene co-expression network

sample Hb_002982_020 Hb_002982_020 Hb_011360_050 Hb_011360_050 Hb_002982_020--Hb_011360_050 Hb_001269_380 Hb_001269_380 Hb_002982_020--Hb_001269_380 Hb_012092_050 Hb_012092_050 Hb_002982_020--Hb_012092_050 Hb_006452_120 Hb_006452_120 Hb_002982_020--Hb_006452_120 Hb_000778_010 Hb_000778_010 Hb_002982_020--Hb_000778_010 Hb_001221_430 Hb_001221_430 Hb_002982_020--Hb_001221_430 Hb_000802_090 Hb_000802_090 Hb_011360_050--Hb_000802_090 Hb_007839_020 Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_002232_480 Hb_002232_480 Hb_011360_050--Hb_002232_480 Hb_001329_200 Hb_001329_200 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_010407_080 Hb_010407_080 Hb_001269_380--Hb_010407_080 Hb_004677_050 Hb_004677_050 Hb_001269_380--Hb_004677_050 Hb_016172_030 Hb_016172_030 Hb_001269_380--Hb_016172_030 Hb_001269_380--Hb_006452_120 Hb_008948_020 Hb_008948_020 Hb_001269_380--Hb_008948_020 Hb_007257_060 Hb_007257_060 Hb_012092_050--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_012092_050--Hb_002014_010 Hb_001300_280 Hb_001300_280 Hb_012092_050--Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_012092_050--Hb_001635_110 Hb_006588_060 Hb_006588_060 Hb_012092_050--Hb_006588_060 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_001221_430--Hb_000173_280 Hb_002456_010 Hb_002456_010 Hb_001221_430--Hb_002456_010 Hb_017387_010 Hb_017387_010 Hb_001221_430--Hb_017387_010 Hb_001359_050 Hb_001359_050 Hb_001221_430--Hb_001359_050 Hb_000107_660 Hb_000107_660 Hb_001221_430--Hb_000107_660 Hb_000460_080 Hb_000460_080 Hb_001221_430--Hb_000460_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.83571 27.5012 20.0879 33.0442 16.5851 11.8523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6132 17.3067 14.3844 26.2059 17.2754

CAGE analysis