Hb_001269_380

Information

Type -
Description -
Location Contig1269: 388536-399132
Sequence    

Annotation

kegg
ID rcu:RCOM_0470870
description hypothetical protein
nr
ID XP_012067510.1
description PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
swissprot
ID Q5U241
description Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2
trembl
ID A0A067LBV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26998 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08204: 388663-391215 , PASA_asmbl_08206: 391252-395220 , PASA_asmbl_08207: 394872-398518 , PASA_asmbl_08208: 396945-397288 , PASA_asmbl_08209: 398637-399121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_380 0.0 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
2 Hb_010407_080 0.0679256664 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
3 Hb_004677_050 0.0732031053 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
4 Hb_016172_030 0.0739707706 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
5 Hb_002982_020 0.0747970209 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
6 Hb_006452_120 0.0762694489 - - PREDICTED: protein FAM188A [Jatropha curcas]
7 Hb_008948_020 0.0764043339 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
8 Hb_011883_020 0.0767001866 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_004037_020 0.0771546373 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
10 Hb_003777_290 0.0778079925 - - polypyrimidine tract binding protein, putative [Ricinus communis]
11 Hb_028487_160 0.0781336167 - - clathrin assembly protein, putative [Ricinus communis]
12 Hb_007839_020 0.0800600934 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000984_170 0.0806411441 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
14 Hb_004030_080 0.0819427564 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
15 Hb_027506_010 0.0838134749 - - PREDICTED: cullin-4 [Jatropha curcas]
16 Hb_001329_200 0.0840042765 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
17 Hb_000059_240 0.0841366695 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
18 Hb_007904_300 0.0850984897 - - copine, putative [Ricinus communis]
19 Hb_006100_020 0.0851027386 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
20 Hb_002042_050 0.0863026506 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_380 Hb_001269_380 Hb_010407_080 Hb_010407_080 Hb_001269_380--Hb_010407_080 Hb_004677_050 Hb_004677_050 Hb_001269_380--Hb_004677_050 Hb_016172_030 Hb_016172_030 Hb_001269_380--Hb_016172_030 Hb_002982_020 Hb_002982_020 Hb_001269_380--Hb_002982_020 Hb_006452_120 Hb_006452_120 Hb_001269_380--Hb_006452_120 Hb_008948_020 Hb_008948_020 Hb_001269_380--Hb_008948_020 Hb_007839_020 Hb_007839_020 Hb_010407_080--Hb_007839_020 Hb_002686_230 Hb_002686_230 Hb_010407_080--Hb_002686_230 Hb_022425_060 Hb_022425_060 Hb_010407_080--Hb_022425_060 Hb_001329_200 Hb_001329_200 Hb_010407_080--Hb_001329_200 Hb_033312_130 Hb_033312_130 Hb_010407_080--Hb_033312_130 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_000984_170 Hb_000984_170 Hb_004677_050--Hb_000984_170 Hb_005663_110 Hb_005663_110 Hb_004677_050--Hb_005663_110 Hb_016347_010 Hb_016347_010 Hb_004677_050--Hb_016347_010 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_060980_010 Hb_060980_010 Hb_016172_030--Hb_060980_010 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_011360_050 Hb_011360_050 Hb_002982_020--Hb_011360_050 Hb_012092_050 Hb_012092_050 Hb_002982_020--Hb_012092_050 Hb_002982_020--Hb_006452_120 Hb_000778_010 Hb_000778_010 Hb_002982_020--Hb_000778_010 Hb_001221_430 Hb_001221_430 Hb_002982_020--Hb_001221_430 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_007413_010 Hb_007413_010 Hb_008948_020--Hb_007413_010 Hb_001716_040 Hb_001716_040 Hb_008948_020--Hb_001716_040 Hb_006913_020 Hb_006913_020 Hb_008948_020--Hb_006913_020 Hb_004435_030 Hb_004435_030 Hb_008948_020--Hb_004435_030 Hb_005582_040 Hb_005582_040 Hb_008948_020--Hb_005582_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16733 8.0284 5.31608 7.38816 3.52893 3.6403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65895 4.0114 4.14135 7.86729 6.85209

CAGE analysis