Hb_004435_030

Information

Type -
Description -
Location Contig4435: 15874-17480
Sequence    

Annotation

kegg
ID rcu:RCOM_1382940
description hypothetical protein
nr
ID XP_012093177.1
description PREDICTED: F-box protein SKIP22 [Jatropha curcas]
swissprot
ID Q9ZUB8
description F-box protein SKIP22 OS=Arabidopsis thaliana GN=SKIP22 PE=1 SV=1
trembl
ID A0A067LJS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16382 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 016_P06.ab1: 16705-17490 , 036_G23.ab1: 16757-17490

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004435_030 0.0 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
2 Hb_112198_010 0.0458169641 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
3 Hb_001716_040 0.0579061576 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
4 Hb_008948_020 0.0611139166 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
5 Hb_000640_040 0.0701535101 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
6 Hb_005582_040 0.0704187077 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
7 Hb_001635_120 0.0737096767 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
8 Hb_004030_080 0.0743944658 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
9 Hb_009658_030 0.0762448802 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
10 Hb_000917_230 0.0780022646 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
11 Hb_002272_030 0.0780525199 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
12 Hb_000504_180 0.0809872721 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_003906_200 0.0811748113 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
14 Hb_002830_010 0.0818269645 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
15 Hb_006452_120 0.0819630078 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_000984_170 0.0823903126 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
17 Hb_000521_240 0.0828823574 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
18 Hb_066920_030 0.083547763 - - PREDICTED: adagio protein 1 [Jatropha curcas]
19 Hb_000012_310 0.0856607464 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
20 Hb_002234_090 0.0866895297 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]

Gene co-expression network

sample Hb_004435_030 Hb_004435_030 Hb_112198_010 Hb_112198_010 Hb_004435_030--Hb_112198_010 Hb_001716_040 Hb_001716_040 Hb_004435_030--Hb_001716_040 Hb_008948_020 Hb_008948_020 Hb_004435_030--Hb_008948_020 Hb_000640_040 Hb_000640_040 Hb_004435_030--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_004435_030--Hb_005582_040 Hb_001635_120 Hb_001635_120 Hb_004435_030--Hb_001635_120 Hb_003906_200 Hb_003906_200 Hb_112198_010--Hb_003906_200 Hb_000917_230 Hb_000917_230 Hb_112198_010--Hb_000917_230 Hb_004030_080 Hb_004030_080 Hb_112198_010--Hb_004030_080 Hb_000868_090 Hb_000868_090 Hb_112198_010--Hb_000868_090 Hb_112198_010--Hb_005582_040 Hb_001716_040--Hb_000640_040 Hb_001716_040--Hb_005582_040 Hb_001716_040--Hb_008948_020 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_007413_010 Hb_007413_010 Hb_008948_020--Hb_007413_010 Hb_006913_020 Hb_006913_020 Hb_008948_020--Hb_006913_020 Hb_008948_020--Hb_005582_040 Hb_002542_110 Hb_002542_110 Hb_000640_040--Hb_002542_110 Hb_000640_040--Hb_005582_040 Hb_001157_240 Hb_001157_240 Hb_000640_040--Hb_001157_240 Hb_010068_080 Hb_010068_080 Hb_000640_040--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_000640_040--Hb_001304_110 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_005582_040--Hb_001304_110 Hb_005582_040--Hb_004030_080 Hb_005582_040--Hb_001635_120 Hb_000028_130 Hb_000028_130 Hb_001635_120--Hb_000028_130 Hb_000017_220 Hb_000017_220 Hb_001635_120--Hb_000017_220 Hb_000174_270 Hb_000174_270 Hb_001635_120--Hb_000174_270 Hb_001999_290 Hb_001999_290 Hb_001635_120--Hb_001999_290 Hb_001473_110 Hb_001473_110 Hb_001635_120--Hb_001473_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5756 30.8707 16.3058 26.3282 9.02039 15.7906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0798 19.0496 20.3554 25.2732 29.4879

CAGE analysis