Hb_000504_180

Information

Type -
Description -
Location Contig504: 217099-221412
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35360g
description POPTRDRAFT_173980; hypothetical protein
nr
ID XP_012072043.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID A0A067LNH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10255 PE=4 SV=1
Gene Ontology
ID GO:0044424
description heterogeneous nuclear ribonucleoprotein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45955: 217835-221415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_180 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
2 Hb_001716_040 0.0649624139 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
3 Hb_001975_150 0.0670548168 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
4 Hb_158530_020 0.0716894265 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
5 Hb_001951_220 0.0723171033 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
6 Hb_009296_080 0.075046617 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
7 Hb_005582_040 0.0751130205 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
8 Hb_002686_090 0.0756347012 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
9 Hb_000635_060 0.0756720448 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
10 Hb_000465_280 0.076638395 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
11 Hb_001789_150 0.0779270858 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
12 Hb_001818_100 0.0781581599 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_000012_310 0.078631117 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
14 Hb_002830_010 0.0786553803 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
15 Hb_004435_030 0.0809872721 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
16 Hb_000803_320 0.0814095141 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
17 Hb_010515_020 0.0816125744 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
18 Hb_015675_040 0.0817631142 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
19 Hb_000640_040 0.082284075 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
20 Hb_001226_140 0.0824154315 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]

Gene co-expression network

sample Hb_000504_180 Hb_000504_180 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001716_040--Hb_000640_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_011537_060 Hb_011537_060 Hb_001975_150--Hb_011537_060 Hb_000185_220 Hb_000185_220 Hb_001975_150--Hb_000185_220 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070 Hb_015675_040 Hb_015675_040 Hb_158530_020--Hb_015675_040 Hb_158530_020--Hb_000185_220 Hb_062226_060 Hb_062226_060 Hb_158530_020--Hb_062226_060 Hb_006059_010 Hb_006059_010 Hb_158530_020--Hb_006059_010 Hb_000023_360 Hb_000023_360 Hb_158530_020--Hb_000023_360 Hb_004480_100 Hb_004480_100 Hb_001951_220--Hb_004480_100 Hb_000917_230 Hb_000917_230 Hb_001951_220--Hb_000917_230 Hb_002686_090 Hb_002686_090 Hb_001951_220--Hb_002686_090 Hb_001951_220--Hb_001716_040 Hb_000186_050 Hb_000186_050 Hb_001951_220--Hb_000186_050 Hb_138585_080 Hb_138585_080 Hb_009296_080--Hb_138585_080 Hb_004137_020 Hb_004137_020 Hb_009296_080--Hb_004137_020 Hb_000465_280 Hb_000465_280 Hb_009296_080--Hb_000465_280 Hb_012114_100 Hb_012114_100 Hb_009296_080--Hb_012114_100 Hb_000803_320 Hb_000803_320 Hb_009296_080--Hb_000803_320 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_005582_040--Hb_000640_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.28861 15.0366 10.4388 19.3406 7.21421 9.57917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.948 12.1143 14.3352 14.4661 25.604

CAGE analysis