Hb_000186_050

Information

Type -
Description -
Location Contig186: 96734-99082
Sequence    

Annotation

kegg
ID pop:POPTR_0011s00960g
description POPTRDRAFT_568163; putative cytoskeletal protein mRNA
nr
ID XP_012091276.1
description PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
swissprot
ID Q91Z38
description Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1
trembl
ID A0A067JL16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21161 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cytoskeletal protein mrna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18227: 96692-187184 , PASA_asmbl_18228: 96692-187184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_050 0.0 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
2 Hb_000665_130 0.0728809041 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
3 Hb_001999_210 0.0785799393 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
4 Hb_001951_220 0.0845183454 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
5 Hb_000504_180 0.089906651 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_002768_060 0.0903969614 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
7 Hb_000465_280 0.0915459765 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
8 Hb_006775_130 0.0936757454 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
9 Hb_007763_070 0.0967048934 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
10 Hb_000720_050 0.0982091616 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
11 Hb_000789_200 0.0982614603 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
12 Hb_001478_010 0.0988189696 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
13 Hb_002686_090 0.1024315201 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
14 Hb_138585_080 0.1045081469 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
15 Hb_005736_020 0.1045291986 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
16 Hb_000613_070 0.1061074703 - - -
17 Hb_001865_070 0.1063138529 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
18 Hb_001157_240 0.1063944654 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
19 Hb_004435_030 0.1065265439 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
20 Hb_000640_040 0.1079024928 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000186_050 Hb_000186_050 Hb_000665_130 Hb_000665_130 Hb_000186_050--Hb_000665_130 Hb_001999_210 Hb_001999_210 Hb_000186_050--Hb_001999_210 Hb_001951_220 Hb_001951_220 Hb_000186_050--Hb_001951_220 Hb_000504_180 Hb_000504_180 Hb_000186_050--Hb_000504_180 Hb_002768_060 Hb_002768_060 Hb_000186_050--Hb_002768_060 Hb_000465_280 Hb_000465_280 Hb_000186_050--Hb_000465_280 Hb_002276_020 Hb_002276_020 Hb_000665_130--Hb_002276_020 Hb_001369_750 Hb_001369_750 Hb_000665_130--Hb_001369_750 Hb_011316_090 Hb_011316_090 Hb_000665_130--Hb_011316_090 Hb_005736_020 Hb_005736_020 Hb_000665_130--Hb_005736_020 Hb_007508_060 Hb_007508_060 Hb_000665_130--Hb_007508_060 Hb_005463_110 Hb_005463_110 Hb_001999_210--Hb_005463_110 Hb_000613_070 Hb_000613_070 Hb_001999_210--Hb_000613_070 Hb_000789_200 Hb_000789_200 Hb_001999_210--Hb_000789_200 Hb_003544_160 Hb_003544_160 Hb_001999_210--Hb_003544_160 Hb_001999_210--Hb_002768_060 Hb_001951_220--Hb_000504_180 Hb_004480_100 Hb_004480_100 Hb_001951_220--Hb_004480_100 Hb_000917_230 Hb_000917_230 Hb_001951_220--Hb_000917_230 Hb_002686_090 Hb_002686_090 Hb_001951_220--Hb_002686_090 Hb_001716_040 Hb_001716_040 Hb_001951_220--Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_001876_010 Hb_001876_010 Hb_002768_060--Hb_001876_010 Hb_002768_060--Hb_004480_100 Hb_002768_060--Hb_003544_160 Hb_002768_060--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_004679_030 Hb_004679_030 Hb_002768_060--Hb_004679_030 Hb_012506_040 Hb_012506_040 Hb_000465_280--Hb_012506_040 Hb_006775_130 Hb_006775_130 Hb_000465_280--Hb_006775_130 Hb_007763_070 Hb_007763_070 Hb_000465_280--Hb_007763_070 Hb_000465_280--Hb_000504_180 Hb_000465_280--Hb_009296_080 Hb_000465_280--Hb_002686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.37783 9.30405 4.40343 10.1657 4.49322 5.37057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.09484 5.89182 7.56295 8.56507 17.8107

CAGE analysis