Hb_005463_110

Information

Type -
Description -
Location Contig5463: 60069-62500
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06940g
description POPTRDRAFT_896588; hypothetical protein
nr
ID XP_012083525.1
description PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
swissprot
ID Q9LE33
description Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1
trembl
ID E6NU29
description JHL05D22.10 protein OS=Jatropha curcas GN=JHL05D22.10 PE=3 SV=1
Gene Ontology
ID GO:0047964
description glyoxylate hydroxypyruvate reductase hpr3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48007: 60135-61452 , PASA_asmbl_48008: 60135-62714 , PASA_asmbl_48010: 61459-61683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_110 0.0 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
2 Hb_001999_210 0.0717716515 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
3 Hb_003544_160 0.0883177813 - - -
4 Hb_002414_050 0.09096357 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
5 Hb_001662_100 0.0936141155 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
6 Hb_001369_750 0.0948548157 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
7 Hb_018292_010 0.0977828138 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
8 Hb_000022_020 0.0997532265 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
9 Hb_002965_090 0.1027198565 - - importin alpha, putative [Ricinus communis]
10 Hb_001511_240 0.104748179 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
11 Hb_007445_010 0.105665941 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_000749_090 0.1071054445 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_012340_070 0.1071986599 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
14 Hb_000359_210 0.1073998144 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009569_040 0.1077951048 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
16 Hb_000684_210 0.1080565963 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
17 Hb_005725_130 0.1084557983 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
18 Hb_001951_150 0.1086387622 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
19 Hb_002276_020 0.1095318075 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
20 Hb_006373_040 0.1102777413 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_005463_110 Hb_005463_110 Hb_001999_210 Hb_001999_210 Hb_005463_110--Hb_001999_210 Hb_003544_160 Hb_003544_160 Hb_005463_110--Hb_003544_160 Hb_002414_050 Hb_002414_050 Hb_005463_110--Hb_002414_050 Hb_001662_100 Hb_001662_100 Hb_005463_110--Hb_001662_100 Hb_001369_750 Hb_001369_750 Hb_005463_110--Hb_001369_750 Hb_018292_010 Hb_018292_010 Hb_005463_110--Hb_018292_010 Hb_000613_070 Hb_000613_070 Hb_001999_210--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_001999_210--Hb_000186_050 Hb_000789_200 Hb_000789_200 Hb_001999_210--Hb_000789_200 Hb_001999_210--Hb_003544_160 Hb_002768_060 Hb_002768_060 Hb_001999_210--Hb_002768_060 Hb_003544_160--Hb_002414_050 Hb_004679_030 Hb_004679_030 Hb_003544_160--Hb_004679_030 Hb_003544_160--Hb_002768_060 Hb_003544_160--Hb_001662_100 Hb_001876_010 Hb_001876_010 Hb_003544_160--Hb_001876_010 Hb_000359_210 Hb_000359_210 Hb_003544_160--Hb_000359_210 Hb_002414_050--Hb_001662_100 Hb_000022_020 Hb_000022_020 Hb_002414_050--Hb_000022_020 Hb_003517_040 Hb_003517_040 Hb_002414_050--Hb_003517_040 Hb_004452_110 Hb_004452_110 Hb_002414_050--Hb_004452_110 Hb_056691_060 Hb_056691_060 Hb_002414_050--Hb_056691_060 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_000479_250 Hb_000479_250 Hb_001369_750--Hb_000479_250 Hb_000261_060 Hb_000261_060 Hb_001369_750--Hb_000261_060 Hb_002276_020 Hb_002276_020 Hb_001369_750--Hb_002276_020 Hb_001366_180 Hb_001366_180 Hb_001369_750--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_022833_100 Hb_022833_100 Hb_018292_010--Hb_022833_100 Hb_001571_050 Hb_001571_050 Hb_018292_010--Hb_001571_050 Hb_002965_090 Hb_002965_090 Hb_018292_010--Hb_002965_090 Hb_000174_180 Hb_000174_180 Hb_018292_010--Hb_000174_180 Hb_002289_080 Hb_002289_080 Hb_018292_010--Hb_002289_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.16101 5.831 5.21091 13.7424 6.46743 10.4171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3517 6.13449 5.11821 9.76232 18.2099

CAGE analysis