Hb_002965_090

Information

Type -
Description -
Location Contig2965: 64292-70185
Sequence    

Annotation

kegg
ID rcu:RCOM_0999470
description importin alpha, putative
nr
ID XP_002519178.1
description importin alpha, putative [Ricinus communis]
swissprot
ID F4JL11
description Importin subunit alpha-2 OS=Arabidopsis thaliana GN=IMPA2 PE=1 SV=1
trembl
ID B9RZK9
description Importin alpha, putative OS=Ricinus communis GN=RCOM_0999470 PE=4 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31024: 64291-68669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_090 0.0 - - importin alpha, putative [Ricinus communis]
2 Hb_001571_050 0.0672122517 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
3 Hb_056691_060 0.0751589685 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
4 Hb_000053_040 0.0778891272 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
5 Hb_001247_310 0.0792343019 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
6 Hb_007380_060 0.0809648334 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
7 Hb_000254_090 0.0822084581 - - PREDICTED: la protein 2 [Jatropha curcas]
8 Hb_000429_150 0.0824240092 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
9 Hb_000830_030 0.0827285675 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
10 Hb_002414_050 0.0834573748 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
11 Hb_002600_150 0.0835350444 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
12 Hb_001014_160 0.0868342375 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
13 Hb_004567_090 0.0873247402 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
14 Hb_000111_320 0.0877147212 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
15 Hb_001449_040 0.0879828045 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
16 Hb_000665_060 0.0885814017 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
17 Hb_006274_030 0.0887494672 - - F-box and wd40 domain protein, putative [Ricinus communis]
18 Hb_013726_090 0.0916409714 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
19 Hb_027073_020 0.0925374713 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
20 Hb_012733_030 0.0926574673 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_002965_090 Hb_002965_090 Hb_001571_050 Hb_001571_050 Hb_002965_090--Hb_001571_050 Hb_056691_060 Hb_056691_060 Hb_002965_090--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_002965_090--Hb_000053_040 Hb_001247_310 Hb_001247_310 Hb_002965_090--Hb_001247_310 Hb_007380_060 Hb_007380_060 Hb_002965_090--Hb_007380_060 Hb_000254_090 Hb_000254_090 Hb_002965_090--Hb_000254_090 Hb_002110_190 Hb_002110_190 Hb_001571_050--Hb_002110_190 Hb_011674_020 Hb_011674_020 Hb_001571_050--Hb_011674_020 Hb_000078_120 Hb_000078_120 Hb_001571_050--Hb_000078_120 Hb_004109_310 Hb_004109_310 Hb_001571_050--Hb_004109_310 Hb_000429_150 Hb_000429_150 Hb_001571_050--Hb_000429_150 Hb_012760_100 Hb_012760_100 Hb_056691_060--Hb_012760_100 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_003734_010 Hb_003734_010 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030 Hb_002600_150 Hb_002600_150 Hb_000053_040--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_000053_040--Hb_000138_100 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000011_060 Hb_000011_060 Hb_000053_040--Hb_000011_060 Hb_000053_040--Hb_003734_010 Hb_000111_320 Hb_000111_320 Hb_001247_310--Hb_000111_320 Hb_000466_140 Hb_000466_140 Hb_001247_310--Hb_000466_140 Hb_001119_060 Hb_001119_060 Hb_001247_310--Hb_001119_060 Hb_000075_040 Hb_000075_040 Hb_001247_310--Hb_000075_040 Hb_000392_430 Hb_000392_430 Hb_001247_310--Hb_000392_430 Hb_004319_080 Hb_004319_080 Hb_001247_310--Hb_004319_080 Hb_012733_030 Hb_012733_030 Hb_007380_060--Hb_012733_030 Hb_007380_060--Hb_002600_150 Hb_001999_310 Hb_001999_310 Hb_007380_060--Hb_001999_310 Hb_007380_060--Hb_011674_020 Hb_168978_030 Hb_168978_030 Hb_007380_060--Hb_168978_030 Hb_013726_090 Hb_013726_090 Hb_007380_060--Hb_013726_090 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_054865_150 Hb_054865_150 Hb_000254_090--Hb_054865_150 Hb_026198_070 Hb_026198_070 Hb_000254_090--Hb_026198_070 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000156_010 Hb_000156_010 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.1156 4.75864 3.66593 9.01517 5.69081 10.1772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.90796 7.86761 5.74505 10.7679 11.2694

CAGE analysis