Hb_004109_310

Information

Type -
Description -
Location Contig4109: 292602-299300
Sequence    

Annotation

kegg
ID rcu:RCOM_0147060
description hypothetical protein
nr
ID XP_012088178.1
description PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26708 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40670: 292879-293155 , PASA_asmbl_40671: 294467-299382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_310 0.0 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
2 Hb_006913_010 0.0643095347 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
3 Hb_007017_030 0.0756913341 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
4 Hb_001571_050 0.0767094731 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
5 Hb_002481_080 0.0815415284 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
6 Hb_073973_100 0.082977387 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
7 Hb_000665_060 0.0837650976 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
8 Hb_000181_400 0.0851037945 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
9 Hb_003940_040 0.0870758841 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001279_150 0.0875458884 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
11 Hb_028227_070 0.087923994 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
12 Hb_000808_280 0.0880068292 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000023_280 0.0881166688 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
14 Hb_000645_090 0.0887007201 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011671_250 0.0892402951 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_002000_080 0.0898983041 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
17 Hb_001016_120 0.0916652392 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
18 Hb_155159_020 0.0918587539 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
19 Hb_003294_070 0.0926458434 - - hypothetical protein RCOM_1714550 [Ricinus communis]
20 Hb_005188_080 0.0930860867 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_004109_310 Hb_004109_310 Hb_006913_010 Hb_006913_010 Hb_004109_310--Hb_006913_010 Hb_007017_030 Hb_007017_030 Hb_004109_310--Hb_007017_030 Hb_001571_050 Hb_001571_050 Hb_004109_310--Hb_001571_050 Hb_002481_080 Hb_002481_080 Hb_004109_310--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_004109_310--Hb_073973_100 Hb_000665_060 Hb_000665_060 Hb_004109_310--Hb_000665_060 Hb_000347_440 Hb_000347_440 Hb_006913_010--Hb_000347_440 Hb_006913_010--Hb_073973_100 Hb_011671_180 Hb_011671_180 Hb_006913_010--Hb_011671_180 Hb_006913_010--Hb_007017_030 Hb_000252_200 Hb_000252_200 Hb_006913_010--Hb_000252_200 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_002965_090 Hb_002965_090 Hb_001571_050--Hb_002965_090 Hb_002110_190 Hb_002110_190 Hb_001571_050--Hb_002110_190 Hb_011674_020 Hb_011674_020 Hb_001571_050--Hb_011674_020 Hb_000078_120 Hb_000078_120 Hb_001571_050--Hb_000078_120 Hb_000429_150 Hb_000429_150 Hb_001571_050--Hb_000429_150 Hb_028227_070 Hb_028227_070 Hb_002481_080--Hb_028227_070 Hb_000028_180 Hb_000028_180 Hb_002481_080--Hb_000028_180 Hb_011485_070 Hb_011485_070 Hb_002481_080--Hb_011485_070 Hb_001016_120 Hb_001016_120 Hb_002481_080--Hb_001016_120 Hb_000645_090 Hb_000645_090 Hb_002481_080--Hb_000645_090 Hb_002000_080 Hb_002000_080 Hb_002481_080--Hb_002000_080 Hb_003376_330 Hb_003376_330 Hb_073973_100--Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_073973_100--Hb_000270_490 Hb_000556_120 Hb_000556_120 Hb_073973_100--Hb_000556_120 Hb_073973_100--Hb_002000_080 Hb_023732_030 Hb_023732_030 Hb_073973_100--Hb_023732_030 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_000174_180 Hb_000174_180 Hb_000665_060--Hb_000174_180 Hb_000156_010 Hb_000156_010 Hb_000665_060--Hb_000156_010 Hb_000254_090 Hb_000254_090 Hb_000665_060--Hb_000254_090 Hb_000192_080 Hb_000192_080 Hb_000665_060--Hb_000192_080 Hb_009218_010 Hb_009218_010 Hb_000665_060--Hb_009218_010 Hb_000009_560 Hb_000009_560 Hb_000665_060--Hb_000009_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42611 6.13279 3.64824 12.7426 8.21105 10.5038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5187 12.0152 9.04707 14.1555 7.28363

CAGE analysis