Hb_000645_090

Information

Type -
Description -
Location Contig645: 87444-88958
Sequence    

Annotation

kegg
ID rcu:RCOM_1000460
description hypothetical protein
nr
ID XP_002519217.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID B9RZP8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000460 PE=4 SV=1
Gene Ontology
ID GO:0005622
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52259: 87305-88952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002481_080 0.0665064047 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
3 Hb_001377_510 0.0688702934 - - ormdl, putative [Ricinus communis]
4 Hb_155159_020 0.0742098191 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
5 Hb_022115_020 0.0780719945 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
6 Hb_000477_060 0.0781366594 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
7 Hb_005188_080 0.08042555 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_000329_110 0.0813701215 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
9 Hb_011485_070 0.0818353889 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
10 Hb_000023_280 0.082394486 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
11 Hb_000185_030 0.0826847623 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
12 Hb_000406_080 0.084958431 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
13 Hb_002078_130 0.0859108098 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
14 Hb_003761_010 0.0861413266 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_001633_210 0.0869082696 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
16 Hb_006615_020 0.0876503798 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
17 Hb_000614_250 0.0880667538 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
18 Hb_000030_030 0.0883266298 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
19 Hb_000840_250 0.0885050064 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
20 Hb_000015_040 0.088598276 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000645_090 Hb_000645_090 Hb_002481_080 Hb_002481_080 Hb_000645_090--Hb_002481_080 Hb_001377_510 Hb_001377_510 Hb_000645_090--Hb_001377_510 Hb_155159_020 Hb_155159_020 Hb_000645_090--Hb_155159_020 Hb_022115_020 Hb_022115_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060 Hb_005188_080 Hb_005188_080 Hb_000645_090--Hb_005188_080 Hb_028227_070 Hb_028227_070 Hb_002481_080--Hb_028227_070 Hb_000028_180 Hb_000028_180 Hb_002481_080--Hb_000028_180 Hb_011485_070 Hb_011485_070 Hb_002481_080--Hb_011485_070 Hb_001016_120 Hb_001016_120 Hb_002481_080--Hb_001016_120 Hb_002000_080 Hb_002000_080 Hb_002481_080--Hb_002000_080 Hb_000003_590 Hb_000003_590 Hb_001377_510--Hb_000003_590 Hb_001377_510--Hb_022115_020 Hb_007416_090 Hb_007416_090 Hb_001377_510--Hb_007416_090 Hb_002110_190 Hb_002110_190 Hb_001377_510--Hb_002110_190 Hb_007638_030 Hb_007638_030 Hb_001377_510--Hb_007638_030 Hb_001159_130 Hb_001159_130 Hb_155159_020--Hb_001159_130 Hb_155159_020--Hb_022115_020 Hb_084646_010 Hb_084646_010 Hb_155159_020--Hb_084646_010 Hb_000116_270 Hb_000116_270 Hb_155159_020--Hb_000116_270 Hb_000603_150 Hb_000603_150 Hb_155159_020--Hb_000603_150 Hb_000787_020 Hb_000787_020 Hb_155159_020--Hb_000787_020 Hb_001511_060 Hb_001511_060 Hb_022115_020--Hb_001511_060 Hb_022115_020--Hb_002110_190 Hb_002809_050 Hb_002809_050 Hb_022115_020--Hb_002809_050 Hb_022115_020--Hb_000028_180 Hb_022115_020--Hb_000603_150 Hb_003697_040 Hb_003697_040 Hb_000477_060--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000477_060--Hb_003605_090 Hb_000363_360 Hb_000363_360 Hb_000477_060--Hb_000363_360 Hb_000477_060--Hb_000116_270 Hb_004934_100 Hb_004934_100 Hb_000477_060--Hb_004934_100 Hb_000749_220 Hb_000749_220 Hb_000477_060--Hb_000749_220 Hb_000015_040 Hb_000015_040 Hb_005188_080--Hb_000015_040 Hb_000680_160 Hb_000680_160 Hb_005188_080--Hb_000680_160 Hb_002078_350 Hb_002078_350 Hb_005188_080--Hb_002078_350 Hb_001545_170 Hb_001545_170 Hb_005188_080--Hb_001545_170 Hb_001579_220 Hb_001579_220 Hb_005188_080--Hb_001579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1723 38.3285 19.8986 57.2321 41.6642 41.8382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.1623 64.5989 60.6588 56.7419 27.8224

CAGE analysis