Hb_007416_090

Information

Type -
Description -
Location Contig7416: 57630-61499
Sequence    

Annotation

kegg
ID rcu:RCOM_0919510
description UDP-sugar transporter, putative
nr
ID XP_002515367.1
description UDP-sugar transporter, putative [Ricinus communis]
swissprot
ID Q18779
description UDP-sugar transporter sqv-7 OS=Caenorhabditis elegans GN=sqv-7 PE=1 SV=1
trembl
ID B9RNP8
description UDP-sugar transporter, putative OS=Ricinus communis GN=RCOM_0919510 PE=4 SV=1
Gene Ontology
ID GO:0055085
description udp-sugar transporter ddb_g0278631

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56415: 57689-61498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_090 0.0 - - UDP-sugar transporter, putative [Ricinus communis]
2 Hb_000069_210 0.0642692512 - - PREDICTED: exportin-2 [Jatropha curcas]
3 Hb_001898_080 0.0728491581 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
4 Hb_000116_270 0.0733510367 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
5 Hb_001789_150 0.0739877986 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
6 Hb_149985_010 0.0742868224 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
7 Hb_000095_080 0.0743234023 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
8 Hb_000212_450 0.0756801356 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
9 Hb_003025_100 0.075873516 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
10 Hb_000574_450 0.0785048183 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
11 Hb_001377_510 0.0801246021 - - ormdl, putative [Ricinus communis]
12 Hb_000260_010 0.0805975884 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
13 Hb_000094_210 0.0816319619 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
14 Hb_001163_100 0.0816663861 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_001016_120 0.0840632151 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
16 Hb_000072_320 0.0858672863 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
17 Hb_000173_410 0.0863151324 - - PREDICTED: BI1-like protein [Jatropha curcas]
18 Hb_012498_010 0.0879545096 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
19 Hb_003529_030 0.0879706743 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
20 Hb_000192_080 0.0884202015 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_090 Hb_007416_090 Hb_000069_210 Hb_000069_210 Hb_007416_090--Hb_000069_210 Hb_001898_080 Hb_001898_080 Hb_007416_090--Hb_001898_080 Hb_000116_270 Hb_000116_270 Hb_007416_090--Hb_000116_270 Hb_001789_150 Hb_001789_150 Hb_007416_090--Hb_001789_150 Hb_149985_010 Hb_149985_010 Hb_007416_090--Hb_149985_010 Hb_000095_080 Hb_000095_080 Hb_007416_090--Hb_000095_080 Hb_001876_010 Hb_001876_010 Hb_000069_210--Hb_001876_010 Hb_000069_210--Hb_000095_080 Hb_000069_210--Hb_001789_150 Hb_001936_130 Hb_001936_130 Hb_000069_210--Hb_001936_130 Hb_000094_210 Hb_000094_210 Hb_000069_210--Hb_000094_210 Hb_001898_080--Hb_001789_150 Hb_000406_140 Hb_000406_140 Hb_001898_080--Hb_000406_140 Hb_003847_030 Hb_003847_030 Hb_001898_080--Hb_003847_030 Hb_000787_020 Hb_000787_020 Hb_001898_080--Hb_000787_020 Hb_000505_150 Hb_000505_150 Hb_001898_080--Hb_000505_150 Hb_001159_130 Hb_001159_130 Hb_000116_270--Hb_001159_130 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000200_020 Hb_000200_020 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_000012_310 Hb_000012_310 Hb_001789_150--Hb_000012_310 Hb_000574_450 Hb_000574_450 Hb_001789_150--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_001789_150--Hb_010515_020 Hb_000497_300 Hb_000497_300 Hb_001789_150--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001789_150--Hb_001352_020 Hb_004480_100 Hb_004480_100 Hb_001789_150--Hb_004480_100 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_149985_010--Hb_001016_120 Hb_005054_110 Hb_005054_110 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_000072_320 Hb_000072_320 Hb_000095_080--Hb_000072_320 Hb_001999_310 Hb_001999_310 Hb_000095_080--Hb_001999_310 Hb_000095_080--Hb_001016_120 Hb_000656_010 Hb_000656_010 Hb_000095_080--Hb_000656_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.51077 5.26252 4.42975 13.3522 5.23943 6.87006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.51101 7.68054 11.1738 9.81836 8.08999

CAGE analysis