Hb_000095_080

Information

Type -
Description -
Location Contig95: 166044-181148
Sequence    

Annotation

kegg
ID egr:104421749
description probable U3 small nucleolar RNA-associated protein 7
nr
ID XP_012088467.1
description PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
swissprot
ID Q5TJE7
description WD repeat-containing protein 46 OS=Canis familiaris GN=WDR46 PE=3 SV=1
trembl
ID A0A067JVD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25348 PE=4 SV=1
Gene Ontology
ID GO:0080008
description probable u3 small nucleolar rna-associated protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63389: 166256-181045 , PASA_asmbl_63390: 174300-174603 , PASA_asmbl_63391: 178973-179478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000095_080 0.0 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
2 Hb_000072_320 0.0714943042 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
3 Hb_001999_310 0.0719390683 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
4 Hb_000069_210 0.0722824025 - - PREDICTED: exportin-2 [Jatropha curcas]
5 Hb_001016_120 0.0728555269 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
6 Hb_007416_090 0.0743234023 - - UDP-sugar transporter, putative [Ricinus communis]
7 Hb_000656_010 0.0748270993 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
8 Hb_013726_090 0.0756045611 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
9 Hb_001314_050 0.0784675782 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
10 Hb_001876_010 0.0796521687 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
11 Hb_003847_030 0.081107583 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
12 Hb_152371_010 0.0813862033 - - RNA-binding KH domain-containing protein [Theobroma cacao]
13 Hb_000011_060 0.0817331214 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
14 Hb_010964_040 0.0821882006 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
15 Hb_004567_090 0.0823042631 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
16 Hb_000574_450 0.0830019684 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
17 Hb_001629_030 0.0833454878 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
18 Hb_002169_050 0.085077022 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
19 Hb_001500_140 0.0851626584 - - pelota, putative [Ricinus communis]
20 Hb_007416_120 0.0852877669 - - arginine/serine-rich splicing factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000095_080 Hb_000095_080 Hb_000072_320 Hb_000072_320 Hb_000095_080--Hb_000072_320 Hb_001999_310 Hb_001999_310 Hb_000095_080--Hb_001999_310 Hb_000069_210 Hb_000069_210 Hb_000095_080--Hb_000069_210 Hb_001016_120 Hb_001016_120 Hb_000095_080--Hb_001016_120 Hb_007416_090 Hb_007416_090 Hb_000095_080--Hb_007416_090 Hb_000656_010 Hb_000656_010 Hb_000095_080--Hb_000656_010 Hb_000207_050 Hb_000207_050 Hb_000072_320--Hb_000207_050 Hb_000072_320--Hb_001016_120 Hb_002169_040 Hb_002169_040 Hb_000072_320--Hb_002169_040 Hb_029510_050 Hb_029510_050 Hb_000072_320--Hb_029510_050 Hb_001314_050 Hb_001314_050 Hb_000072_320--Hb_001314_050 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_001876_010 Hb_001876_010 Hb_000069_210--Hb_001876_010 Hb_000069_210--Hb_007416_090 Hb_001789_150 Hb_001789_150 Hb_000069_210--Hb_001789_150 Hb_001936_130 Hb_001936_130 Hb_000069_210--Hb_001936_130 Hb_000094_210 Hb_000094_210 Hb_000069_210--Hb_000094_210 Hb_000116_270 Hb_000116_270 Hb_001016_120--Hb_000116_270 Hb_149985_010 Hb_149985_010 Hb_001016_120--Hb_149985_010 Hb_084646_010 Hb_084646_010 Hb_001016_120--Hb_084646_010 Hb_002481_080 Hb_002481_080 Hb_001016_120--Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_001016_120--Hb_028227_070 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_001898_080 Hb_001898_080 Hb_007416_090--Hb_001898_080 Hb_007416_090--Hb_000116_270 Hb_007416_090--Hb_001789_150 Hb_007416_090--Hb_149985_010 Hb_000656_010--Hb_001876_010 Hb_000789_200 Hb_000789_200 Hb_000656_010--Hb_000789_200 Hb_001629_030 Hb_001629_030 Hb_000656_010--Hb_001629_030 Hb_005976_080 Hb_005976_080 Hb_000656_010--Hb_005976_080 Hb_000189_550 Hb_000189_550 Hb_000656_010--Hb_000189_550 Hb_013726_090 Hb_013726_090 Hb_000656_010--Hb_013726_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.14379 7.30265 8.0842 15.2583 6.75117 12.3901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5039 12.2496 15.0713 19.2262 14.5089

CAGE analysis