Hb_005976_080

Information

Type -
Description -
Location Contig5976: 65150-70336
Sequence    

Annotation

kegg
ID rcu:RCOM_1408480
description RNA-binding protein, putative
nr
ID XP_012079235.1
description PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
swissprot
ID O94432
description Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=3 SV=1
trembl
ID A0A067KAA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12399 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50413: 65154-70264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005976_080 0.0 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
2 Hb_015675_040 0.0672462509 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
3 Hb_004159_020 0.0703304414 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
4 Hb_000656_010 0.0708771734 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
5 Hb_003878_150 0.0742840557 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
6 Hb_027073_020 0.0758922005 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
7 Hb_001195_400 0.0773575362 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
8 Hb_005601_040 0.0778280381 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
9 Hb_001629_030 0.0795083017 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
10 Hb_006059_030 0.0800649887 - - glutamate dehydrogenase, putative [Ricinus communis]
11 Hb_000663_060 0.0816991043 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
12 Hb_004545_110 0.0831340009 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
13 Hb_008033_040 0.08313592 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
14 Hb_001818_100 0.0833270726 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_041290_020 0.0855904171 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
16 Hb_001347_060 0.0862983866 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
17 Hb_000080_130 0.0870203628 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
18 Hb_003025_100 0.087292218 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
19 Hb_000297_120 0.0874772632 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
20 Hb_000185_220 0.0880813466 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]

Gene co-expression network

sample Hb_005976_080 Hb_005976_080 Hb_015675_040 Hb_015675_040 Hb_005976_080--Hb_015675_040 Hb_004159_020 Hb_004159_020 Hb_005976_080--Hb_004159_020 Hb_000656_010 Hb_000656_010 Hb_005976_080--Hb_000656_010 Hb_003878_150 Hb_003878_150 Hb_005976_080--Hb_003878_150 Hb_027073_020 Hb_027073_020 Hb_005976_080--Hb_027073_020 Hb_001195_400 Hb_001195_400 Hb_005976_080--Hb_001195_400 Hb_000080_130 Hb_000080_130 Hb_015675_040--Hb_000080_130 Hb_158530_020 Hb_158530_020 Hb_015675_040--Hb_158530_020 Hb_011224_050 Hb_011224_050 Hb_015675_040--Hb_011224_050 Hb_000840_200 Hb_000840_200 Hb_015675_040--Hb_000840_200 Hb_000185_220 Hb_000185_220 Hb_015675_040--Hb_000185_220 Hb_091296_010 Hb_091296_010 Hb_004159_020--Hb_091296_010 Hb_006275_070 Hb_006275_070 Hb_004159_020--Hb_006275_070 Hb_003025_100 Hb_003025_100 Hb_004159_020--Hb_003025_100 Hb_000072_320 Hb_000072_320 Hb_004159_020--Hb_000072_320 Hb_001828_150 Hb_001828_150 Hb_004159_020--Hb_001828_150 Hb_001876_010 Hb_001876_010 Hb_000656_010--Hb_001876_010 Hb_000789_200 Hb_000789_200 Hb_000656_010--Hb_000789_200 Hb_001629_030 Hb_001629_030 Hb_000656_010--Hb_001629_030 Hb_000189_550 Hb_000189_550 Hb_000656_010--Hb_000189_550 Hb_013726_090 Hb_013726_090 Hb_000656_010--Hb_013726_090 Hb_109000_020 Hb_109000_020 Hb_003878_150--Hb_109000_020 Hb_005725_130 Hb_005725_130 Hb_003878_150--Hb_005725_130 Hb_001662_100 Hb_001662_100 Hb_003878_150--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_003878_150--Hb_001195_400 Hb_001789_110 Hb_001789_110 Hb_027073_020--Hb_001789_110 Hb_001999_310 Hb_001999_310 Hb_027073_020--Hb_001999_310 Hb_027073_020--Hb_000789_200 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_122968_010 Hb_122968_010 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.17899 7.08537 13.0624 17.743 8.88914 10.7824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6908 17.1013 13.4424 17.3288 21.9023

CAGE analysis