Hb_004159_020

Information

Type -
Description -
Location Contig4159: 15329-19750
Sequence    

Annotation

kegg
ID rcu:RCOM_0211410
description dihydrodipicolinate reductase, putative (EC:1.3.1.26)
nr
ID EMT24413.1
description Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
swissprot
ID O80574
description 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2
trembl
ID M8BRI3
description Putative dihydrodipicolinate reductase 2, chloroplastic OS=Aegilops tauschii GN=F775_15735 PE=4 SV=1
Gene Ontology
ID GO:0004672
description 4-hydroxy-tetrahydrodipicolinate reductase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41133: 16324-19918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004159_020 0.0 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
2 Hb_005976_080 0.0703304414 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
3 Hb_091296_010 0.0819119961 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_006275_070 0.0871202775 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
5 Hb_003025_100 0.0881764943 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
6 Hb_000072_320 0.0894205454 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
7 Hb_001828_150 0.0910163696 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
8 Hb_005601_040 0.0916874692 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
9 Hb_025098_010 0.0934879152 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_001629_030 0.0951230108 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
11 Hb_000656_010 0.0958943965 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
12 Hb_000205_140 0.0976346272 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
13 Hb_008841_020 0.1000773152 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
14 Hb_009328_020 0.1030161309 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000095_080 0.1036195487 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
16 Hb_001936_130 0.1038486581 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
17 Hb_002748_020 0.104023315 - - transducin family protein [Populus trichocarpa]
18 Hb_001307_030 0.1055803266 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
19 Hb_001004_070 0.1058440134 - - conserved hypothetical protein [Ricinus communis]
20 Hb_041290_020 0.1062270714 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004159_020 Hb_004159_020 Hb_005976_080 Hb_005976_080 Hb_004159_020--Hb_005976_080 Hb_091296_010 Hb_091296_010 Hb_004159_020--Hb_091296_010 Hb_006275_070 Hb_006275_070 Hb_004159_020--Hb_006275_070 Hb_003025_100 Hb_003025_100 Hb_004159_020--Hb_003025_100 Hb_000072_320 Hb_000072_320 Hb_004159_020--Hb_000072_320 Hb_001828_150 Hb_001828_150 Hb_004159_020--Hb_001828_150 Hb_015675_040 Hb_015675_040 Hb_005976_080--Hb_015675_040 Hb_000656_010 Hb_000656_010 Hb_005976_080--Hb_000656_010 Hb_003878_150 Hb_003878_150 Hb_005976_080--Hb_003878_150 Hb_027073_020 Hb_027073_020 Hb_005976_080--Hb_027073_020 Hb_001195_400 Hb_001195_400 Hb_005976_080--Hb_001195_400 Hb_091296_010--Hb_003025_100 Hb_001936_130 Hb_001936_130 Hb_091296_010--Hb_001936_130 Hb_004108_160 Hb_004108_160 Hb_091296_010--Hb_004108_160 Hb_001818_100 Hb_001818_100 Hb_091296_010--Hb_001818_100 Hb_000205_140 Hb_000205_140 Hb_091296_010--Hb_000205_140 Hb_029879_070 Hb_029879_070 Hb_006275_070--Hb_029879_070 Hb_000479_250 Hb_000479_250 Hb_006275_070--Hb_000479_250 Hb_006275_070--Hb_000656_010 Hb_006275_070--Hb_001936_130 Hb_008176_010 Hb_008176_010 Hb_006275_070--Hb_008176_010 Hb_003025_100--Hb_001818_100 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_012498_010 Hb_012498_010 Hb_003025_100--Hb_012498_010 Hb_000116_270 Hb_000116_270 Hb_003025_100--Hb_000116_270 Hb_006478_020 Hb_006478_020 Hb_003025_100--Hb_006478_020 Hb_000207_050 Hb_000207_050 Hb_000072_320--Hb_000207_050 Hb_000095_080 Hb_000095_080 Hb_000072_320--Hb_000095_080 Hb_001016_120 Hb_001016_120 Hb_000072_320--Hb_001016_120 Hb_002169_040 Hb_002169_040 Hb_000072_320--Hb_002169_040 Hb_029510_050 Hb_029510_050 Hb_000072_320--Hb_029510_050 Hb_001314_050 Hb_001314_050 Hb_000072_320--Hb_001314_050 Hb_001218_030 Hb_001218_030 Hb_001828_150--Hb_001218_030 Hb_006573_190 Hb_006573_190 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_000853_150 Hb_000853_150 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47839 1.38631 4.45094 6.36453 3.03454 4.61817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02323 5.78579 5.90317 5.91004 6.57579

CAGE analysis