Hb_091296_010

Information

Type -
Description -
Location Contig91296: 593-2104
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091296_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_003025_100 0.0657188925 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
3 Hb_001936_130 0.0722227859 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
4 Hb_004159_020 0.0819119961 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
5 Hb_004108_160 0.084073523 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
6 Hb_001818_100 0.0842759306 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_000205_140 0.0848367565 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
8 Hb_001629_030 0.0871766113 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
9 Hb_027380_220 0.0895241921 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
10 Hb_006275_070 0.0908202578 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
11 Hb_000556_090 0.0914941913 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
12 Hb_001004_070 0.0924807443 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000917_130 0.092944371 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
14 Hb_004109_080 0.0957580675 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
15 Hb_019181_040 0.0962740559 - - component of oligomeric golgi complex, putative [Ricinus communis]
16 Hb_005601_040 0.0968381311 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
17 Hb_004583_010 0.0969711471 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
18 Hb_005291_050 0.0976279015 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
19 Hb_005976_080 0.0976893909 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
20 Hb_011228_010 0.1002964227 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_091296_010 Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_091296_010--Hb_003025_100 Hb_001936_130 Hb_001936_130 Hb_091296_010--Hb_001936_130 Hb_004159_020 Hb_004159_020 Hb_091296_010--Hb_004159_020 Hb_004108_160 Hb_004108_160 Hb_091296_010--Hb_004108_160 Hb_001818_100 Hb_001818_100 Hb_091296_010--Hb_001818_100 Hb_000205_140 Hb_000205_140 Hb_091296_010--Hb_000205_140 Hb_003025_100--Hb_001818_100 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_012498_010 Hb_012498_010 Hb_003025_100--Hb_012498_010 Hb_000116_270 Hb_000116_270 Hb_003025_100--Hb_000116_270 Hb_006478_020 Hb_006478_020 Hb_003025_100--Hb_006478_020 Hb_001004_070 Hb_001004_070 Hb_001936_130--Hb_001004_070 Hb_027380_220 Hb_027380_220 Hb_001936_130--Hb_027380_220 Hb_001936_130--Hb_003025_100 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_005976_080 Hb_005976_080 Hb_004159_020--Hb_005976_080 Hb_006275_070 Hb_006275_070 Hb_004159_020--Hb_006275_070 Hb_004159_020--Hb_003025_100 Hb_000072_320 Hb_000072_320 Hb_004159_020--Hb_000072_320 Hb_001828_150 Hb_001828_150 Hb_004159_020--Hb_001828_150 Hb_003153_010 Hb_003153_010 Hb_004108_160--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_004108_160--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004108_160--Hb_001629_030 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_004108_160--Hb_001818_100 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_001818_100--Hb_001629_030 Hb_004052_170 Hb_004052_170 Hb_001818_100--Hb_004052_170 Hb_005601_040 Hb_005601_040 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_079526_040 Hb_079526_040 Hb_000205_140--Hb_079526_040 Hb_001981_040 Hb_001981_040 Hb_000205_140--Hb_001981_040 Hb_000205_140--Hb_003025_100 Hb_006153_070 Hb_006153_070 Hb_000205_140--Hb_006153_070 Hb_001518_080 Hb_001518_080 Hb_000205_140--Hb_001518_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.52223 3.40772 5.99374 9.94007 4.60252 6.46097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16995 6.73472 9.20878 6.14943 10.0703

CAGE analysis