Hb_008421_020

Information

Type -
Description -
Location Contig8421: 28486-48120
Sequence    

Annotation

kegg
ID vvi:104877354
description uncharacterized LOC104877354
nr
ID XP_012074005.1
description PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D7TVM0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60163: 28619-40154 , PASA_asmbl_60164: 29044-29273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008421_020 0.0 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
2 Hb_000811_070 0.0619549361 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
3 Hb_013405_020 0.0667244816 - - -
4 Hb_001541_120 0.0702712609 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
5 Hb_003153_010 0.0704695708 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
6 Hb_004108_160 0.0721784093 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
7 Hb_005016_040 0.0728387758 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
8 Hb_001226_140 0.0736066124 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
9 Hb_001766_050 0.0752292836 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
10 Hb_007975_060 0.0773955832 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
11 Hb_006740_030 0.0780107355 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
12 Hb_004583_010 0.0801752576 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
13 Hb_000023_260 0.080760451 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
14 Hb_015675_040 0.0871441797 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
15 Hb_000928_070 0.0879707135 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
16 Hb_007533_040 0.0880623251 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_006846_150 0.0883527494 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000140_090 0.0899941275 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
19 Hb_001818_100 0.0901364396 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_000107_430 0.0901544038 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_008421_020 Hb_008421_020 Hb_000811_070 Hb_000811_070 Hb_008421_020--Hb_000811_070 Hb_013405_020 Hb_013405_020 Hb_008421_020--Hb_013405_020 Hb_001541_120 Hb_001541_120 Hb_008421_020--Hb_001541_120 Hb_003153_010 Hb_003153_010 Hb_008421_020--Hb_003153_010 Hb_004108_160 Hb_004108_160 Hb_008421_020--Hb_004108_160 Hb_005016_040 Hb_005016_040 Hb_008421_020--Hb_005016_040 Hb_006846_150 Hb_006846_150 Hb_000811_070--Hb_006846_150 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_007975_060 Hb_007975_060 Hb_013405_020--Hb_007975_060 Hb_013405_020--Hb_005016_040 Hb_002157_120 Hb_002157_120 Hb_013405_020--Hb_002157_120 Hb_006132_090 Hb_006132_090 Hb_013405_020--Hb_006132_090 Hb_004754_050 Hb_004754_050 Hb_013405_020--Hb_004754_050 Hb_000928_070 Hb_000928_070 Hb_001541_120--Hb_000928_070 Hb_001766_050 Hb_001766_050 Hb_001541_120--Hb_001766_050 Hb_001541_120--Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_001541_120--Hb_000140_090 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_003153_010--Hb_004108_160 Hb_000556_090 Hb_000556_090 Hb_003153_010--Hb_000556_090 Hb_003376_230 Hb_003376_230 Hb_003153_010--Hb_003376_230 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170 Hb_004108_160--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004108_160--Hb_001629_030 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_001818_100 Hb_001818_100 Hb_004108_160--Hb_001818_100 Hb_005016_040--Hb_000140_090 Hb_005016_040--Hb_000811_070 Hb_005016_040--Hb_005167_010 Hb_000080_130 Hb_000080_130 Hb_005016_040--Hb_000080_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0288 3.78367 6.14585 5.61709 3.21271 3.82281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.40055 6.20129 6.11512 3.32819 9.2047

CAGE analysis