Hb_002769_030

Information

Type -
Description -
Location Contig2769: 75223-80748
Sequence    

Annotation

kegg
ID rcu:RCOM_1449560
description DNA-damage-inducible protein f, putative
nr
ID XP_012067186.1
description PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8W4G3
description MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1
trembl
ID A0A067LCE7
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_26747 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28945: 75499-80159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002769_030 0.0 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
2 Hb_000039_150 0.0644969226 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
3 Hb_008959_010 0.0668107385 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003153_010 0.0700505703 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
5 Hb_001163_060 0.0706646398 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_001629_030 0.0768498682 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
7 Hb_004108_160 0.0769840339 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
8 Hb_000046_540 0.0774953759 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
9 Hb_000212_230 0.0779370695 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
10 Hb_002078_340 0.0859653507 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
11 Hb_007765_100 0.0863071101 - - PREDICTED: helicase SKI2W [Jatropha curcas]
12 Hb_001304_110 0.0871286447 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
13 Hb_001157_240 0.087945791 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
14 Hb_000094_070 0.0883170562 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
15 Hb_006913_020 0.0886288891 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
16 Hb_000365_240 0.0888058395 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
17 Hb_004583_010 0.0892538168 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
18 Hb_000640_040 0.0901921154 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
19 Hb_000193_330 0.090468018 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
20 Hb_001818_100 0.090774483 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_002769_030 Hb_002769_030 Hb_000039_150 Hb_000039_150 Hb_002769_030--Hb_000039_150 Hb_008959_010 Hb_008959_010 Hb_002769_030--Hb_008959_010 Hb_003153_010 Hb_003153_010 Hb_002769_030--Hb_003153_010 Hb_001163_060 Hb_001163_060 Hb_002769_030--Hb_001163_060 Hb_001629_030 Hb_001629_030 Hb_002769_030--Hb_001629_030 Hb_004108_160 Hb_004108_160 Hb_002769_030--Hb_004108_160 Hb_000039_150--Hb_008959_010 Hb_011228_010 Hb_011228_010 Hb_000039_150--Hb_011228_010 Hb_006501_090 Hb_006501_090 Hb_000039_150--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_008959_010--Hb_004108_160 Hb_002263_020 Hb_002263_020 Hb_008959_010--Hb_002263_020 Hb_001304_110 Hb_001304_110 Hb_008959_010--Hb_001304_110 Hb_008959_010--Hb_011228_010 Hb_003153_010--Hb_004108_160 Hb_000556_090 Hb_000556_090 Hb_003153_010--Hb_000556_090 Hb_003376_230 Hb_003376_230 Hb_003153_010--Hb_003376_230 Hb_008421_020 Hb_008421_020 Hb_003153_010--Hb_008421_020 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170 Hb_000445_090 Hb_000445_090 Hb_001163_060--Hb_000445_090 Hb_000193_330 Hb_000193_330 Hb_001163_060--Hb_000193_330 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040 Hb_001818_100 Hb_001818_100 Hb_001629_030--Hb_001818_100 Hb_005601_040 Hb_005601_040 Hb_001629_030--Hb_005601_040 Hb_001629_030--Hb_004108_160 Hb_000656_010 Hb_000656_010 Hb_001629_030--Hb_000656_010 Hb_004052_170 Hb_004052_170 Hb_001629_030--Hb_004052_170 Hb_001629_030--Hb_003153_010 Hb_004108_160--Hb_000556_090 Hb_004108_160--Hb_001818_100 Hb_004108_160--Hb_008421_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37612 2.83715 4.28841 2.78299 2.33751 3.01165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08822 2.40082 4.48624 3.4978 5.88458

CAGE analysis