Hb_000445_090

Information

Type transcription factor
Description TF Family: SET
Location Contig445: 92243-112011
Sequence    

Annotation

kegg
ID rcu:RCOM_0561810
description huntingtin interacting protein, putative (EC:2.1.1.43)
nr
ID XP_012078323.1
description PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
swissprot
ID Q2LAE1
description Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 PE=1 SV=1
trembl
ID A0A067KCX7
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_12155 PE=4 SV=1
Gene Ontology
ID GO:0008168
description histone-lysine n-methyltransferase ashh2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42873: 91732-92194 , PASA_asmbl_42876: 94724-95086 , PASA_asmbl_42877: 95301-95841 , PASA_asmbl_42878: 98041-98356 , PASA_asmbl_42879: 97903-112012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_090 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
2 Hb_001163_060 0.0669121156 - - neutral/alkaline invertase [Manihot esculenta]
3 Hb_000193_330 0.072947148 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
4 Hb_000635_060 0.0787243474 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
5 Hb_000181_340 0.0792093603 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
6 Hb_009288_020 0.0795988686 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
7 Hb_002539_070 0.082557207 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
8 Hb_017469_110 0.0833557138 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
9 Hb_001563_010 0.0848422823 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
10 Hb_006816_370 0.0863451346 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
11 Hb_073171_070 0.0875102817 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
12 Hb_005701_130 0.087768625 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
13 Hb_004374_110 0.089495862 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
14 Hb_003040_050 0.0896581267 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
15 Hb_000773_040 0.0898815126 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
16 Hb_029584_070 0.0903872186 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
17 Hb_003417_040 0.0906861983 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
18 Hb_007763_070 0.0912491348 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
19 Hb_001648_020 0.0923902929 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
20 Hb_012053_090 0.0924876839 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_090 Hb_000445_090 Hb_001163_060 Hb_001163_060 Hb_000445_090--Hb_001163_060 Hb_000193_330 Hb_000193_330 Hb_000445_090--Hb_000193_330 Hb_000635_060 Hb_000635_060 Hb_000445_090--Hb_000635_060 Hb_000181_340 Hb_000181_340 Hb_000445_090--Hb_000181_340 Hb_009288_020 Hb_009288_020 Hb_000445_090--Hb_009288_020 Hb_002539_070 Hb_002539_070 Hb_000445_090--Hb_002539_070 Hb_001163_060--Hb_000193_330 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040 Hb_000538_280 Hb_000538_280 Hb_000193_330--Hb_000538_280 Hb_003040_050 Hb_003040_050 Hb_000193_330--Hb_003040_050 Hb_000193_330--Hb_000181_340 Hb_000193_330--Hb_004003_040 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070 Hb_000635_060--Hb_002539_070 Hb_001716_040 Hb_001716_040 Hb_000635_060--Hb_001716_040 Hb_001478_010 Hb_001478_010 Hb_000635_060--Hb_001478_010 Hb_002686_090 Hb_002686_090 Hb_000635_060--Hb_002686_090 Hb_000482_040 Hb_000482_040 Hb_000635_060--Hb_000482_040 Hb_000504_180 Hb_000504_180 Hb_000635_060--Hb_000504_180 Hb_012632_010 Hb_012632_010 Hb_000181_340--Hb_012632_010 Hb_062226_070 Hb_062226_070 Hb_000181_340--Hb_062226_070 Hb_004374_110 Hb_004374_110 Hb_000181_340--Hb_004374_110 Hb_000103_340 Hb_000103_340 Hb_000181_340--Hb_000103_340 Hb_001999_290 Hb_001999_290 Hb_000181_340--Hb_001999_290 Hb_009288_020--Hb_003040_050 Hb_006663_060 Hb_006663_060 Hb_009288_020--Hb_006663_060 Hb_073171_070 Hb_073171_070 Hb_009288_020--Hb_073171_070 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_000059_230 Hb_000059_230 Hb_009288_020--Hb_000059_230 Hb_011174_020 Hb_011174_020 Hb_009288_020--Hb_011174_020 Hb_002539_070--Hb_004374_110 Hb_003943_110 Hb_003943_110 Hb_002539_070--Hb_003943_110 Hb_002539_070--Hb_012632_010 Hb_002539_070--Hb_000365_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12573 4.66769 4.22625 3.80789 3.48602 2.86988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95194 3.12934 3.79905 3.06862 8.27761

CAGE analysis