Hb_009288_020

Information

Type -
Description -
Location Contig9288: 10859-16530
Sequence    

Annotation

kegg
ID rcu:RCOM_1502940
description Protein FRIGIDA, putative
nr
ID XP_012090538.1
description PREDICTED: protein FRIGIDA [Jatropha curcas]
swissprot
ID P0DH90
description Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1
trembl
ID A0A067JI55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26334 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62790: 11163-16369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009288_020 0.0 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
2 Hb_003040_050 0.0377808639 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
3 Hb_006663_060 0.0463980809 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
4 Hb_073171_070 0.0490033351 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
5 Hb_006839_010 0.0530525462 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
6 Hb_000059_230 0.0619366842 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
7 Hb_011174_020 0.0635528044 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
8 Hb_002874_110 0.0664270094 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
9 Hb_000538_280 0.0697359716 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
10 Hb_000317_100 0.0707132868 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
11 Hb_000773_040 0.0708635129 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
12 Hb_000270_190 0.073639544 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
13 Hb_005215_010 0.0747353461 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
14 Hb_000441_090 0.0748277469 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
15 Hb_017469_110 0.0748933002 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
16 Hb_001712_060 0.0754568289 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
17 Hb_000803_320 0.0757696089 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
18 Hb_000193_330 0.0772903733 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
19 Hb_048476_080 0.0774699213 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
20 Hb_001789_110 0.0774799688 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009288_020 Hb_009288_020 Hb_003040_050 Hb_003040_050 Hb_009288_020--Hb_003040_050 Hb_006663_060 Hb_006663_060 Hb_009288_020--Hb_006663_060 Hb_073171_070 Hb_073171_070 Hb_009288_020--Hb_073171_070 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_000059_230 Hb_000059_230 Hb_009288_020--Hb_000059_230 Hb_011174_020 Hb_011174_020 Hb_009288_020--Hb_011174_020 Hb_003040_050--Hb_073171_070 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_006663_060--Hb_073171_070 Hb_006210_010 Hb_006210_010 Hb_006663_060--Hb_006210_010 Hb_002874_110 Hb_002874_110 Hb_006663_060--Hb_002874_110 Hb_000568_050 Hb_000568_050 Hb_006663_060--Hb_000568_050 Hb_000773_040 Hb_000773_040 Hb_073171_070--Hb_000773_040 Hb_000270_190 Hb_000270_190 Hb_073171_070--Hb_000270_190 Hb_007413_010 Hb_007413_010 Hb_073171_070--Hb_007413_010 Hb_006839_010--Hb_000059_230 Hb_004374_110 Hb_004374_110 Hb_006839_010--Hb_004374_110 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_001377_100 Hb_001377_100 Hb_006839_010--Hb_001377_100 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_000059_230--Hb_001377_100 Hb_012055_110 Hb_012055_110 Hb_000059_230--Hb_012055_110 Hb_000059_230--Hb_003040_050 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.66475 13.1294 9.24055 13.1926 8.68332 7.17072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.20456 6.85504 7.11301 10.4336 19.3896

CAGE analysis