Hb_017469_110

Information

Type -
Description -
Location Contig17469: 87553-90474
Sequence    

Annotation

kegg
ID rcu:RCOM_0846800
description Urease accessory protein ureH, putative
nr
ID XP_012081792.1
description PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
swissprot
ID Q07404
description Urease accessory protein UreH OS=Bacillus sp. (strain TB-90) GN=ureH PE=3 SV=1
trembl
ID A0A067K3P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18830 PE=4 SV=1
Gene Ontology
ID GO:0016021
description urease accessory protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16628: 87580-90347
cDNA
(Sanger)
(ID:Location)		 019_D07.ab1: 88263-90347

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017469_110 0.0 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
2 Hb_013459_020 0.0495022791 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
3 Hb_011174_020 0.0591687489 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
4 Hb_000795_040 0.0607234657 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
5 Hb_005276_200 0.0643062305 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
6 Hb_002581_010 0.0647108085 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
7 Hb_001008_070 0.0663527403 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
8 Hb_188281_040 0.0667692319 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
9 Hb_003417_040 0.0676736606 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
10 Hb_000599_270 0.0683763698 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
11 Hb_000085_210 0.0696014611 - - DNA topoisomerase type I, putative [Ricinus communis]
12 Hb_005260_030 0.0702736586 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
13 Hb_003040_050 0.0705574836 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
14 Hb_007413_010 0.0712581325 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
15 Hb_026053_040 0.0714191593 - - conserved hypothetical protein [Ricinus communis]
16 Hb_073171_070 0.0718273492 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
17 Hb_001925_060 0.0740248087 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
18 Hb_009288_020 0.0748933002 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
19 Hb_000538_280 0.0791726714 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
20 Hb_000568_050 0.0799272437 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_017469_110 Hb_017469_110 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_011174_020 Hb_011174_020 Hb_017469_110--Hb_011174_020 Hb_000795_040 Hb_000795_040 Hb_017469_110--Hb_000795_040 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_002581_010 Hb_002581_010 Hb_017469_110--Hb_002581_010 Hb_001008_070 Hb_001008_070 Hb_017469_110--Hb_001008_070 Hb_000826_070 Hb_000826_070 Hb_013459_020--Hb_000826_070 Hb_013459_020--Hb_011174_020 Hb_002973_110 Hb_002973_110 Hb_013459_020--Hb_002973_110 Hb_001999_140 Hb_001999_140 Hb_013459_020--Hb_001999_140 Hb_013459_020--Hb_001008_070 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_000085_210 Hb_000085_210 Hb_000795_040--Hb_000085_210 Hb_000795_040--Hb_002581_010 Hb_000795_040--Hb_011174_020 Hb_000795_040--Hb_001925_060 Hb_000879_040 Hb_000879_040 Hb_000795_040--Hb_000879_040 Hb_005276_200--Hb_000795_040 Hb_005276_200--Hb_011174_020 Hb_005276_200--Hb_013459_020 Hb_002205_030 Hb_002205_030 Hb_005276_200--Hb_002205_030 Hb_005276_200--Hb_001925_060 Hb_002581_010--Hb_001008_070 Hb_003117_030 Hb_003117_030 Hb_002581_010--Hb_003117_030 Hb_000599_270 Hb_000599_270 Hb_002581_010--Hb_000599_270 Hb_007413_010 Hb_007413_010 Hb_002581_010--Hb_007413_010 Hb_000181_100 Hb_000181_100 Hb_001008_070--Hb_000181_100 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_000320_470 Hb_000320_470 Hb_001008_070--Hb_000320_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.14303 15.1522 14.5507 10.7251 10.3108 10.8757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.59686 9.52631 6.98572 13.2067 24.7335

CAGE analysis