Hb_002973_110

Information

Type -
Description -
Location Contig2973: 119782-147611
Sequence    

Annotation

kegg
ID rcu:RCOM_1441590
description multidrug resistance-associated protein, putative (EC:1.3.1.74)
nr
ID AIU41639.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9SKX0
description ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3
trembl
ID A0A097P9P6
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCC13 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 13 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31141: 119784-120086 , PASA_asmbl_31142: 120106-121845 , PASA_asmbl_31143: 122885-125529 , PASA_asmbl_31144: 126984-131596 , PASA_asmbl_31145: 140704-152330 , PASA_asmbl_31146: 143363-143792 , PASA_asmbl_31147: 144340-144600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_110 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_013459_020 0.0714636303 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
3 Hb_005211_020 0.0747020576 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
4 Hb_013749_050 0.0792076952 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
5 Hb_007012_030 0.0795859272 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
6 Hb_001472_160 0.0815979954 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_002600_070 0.0822880496 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
8 Hb_000617_250 0.0897198777 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
9 Hb_026053_040 0.0902694951 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005250_010 0.0918630873 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
11 Hb_013405_080 0.0922050004 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
12 Hb_017469_110 0.092640184 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
13 Hb_000320_470 0.0928722982 - - calcium-dependent protein kinase [Hevea brasiliensis]
14 Hb_000748_090 0.0942490883 - - glucose inhibited division protein A, putative [Ricinus communis]
15 Hb_025477_050 0.0944409851 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000771_170 0.0947444388 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_004884_180 0.0948895485 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
18 Hb_000186_080 0.0952044504 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
19 Hb_000826_070 0.0953996813 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007192_090 0.095495295 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]

Gene co-expression network

sample Hb_002973_110 Hb_002973_110 Hb_013459_020 Hb_013459_020 Hb_002973_110--Hb_013459_020 Hb_005211_020 Hb_005211_020 Hb_002973_110--Hb_005211_020 Hb_013749_050 Hb_013749_050 Hb_002973_110--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_002973_110--Hb_007012_030 Hb_001472_160 Hb_001472_160 Hb_002973_110--Hb_001472_160 Hb_002600_070 Hb_002600_070 Hb_002973_110--Hb_002600_070 Hb_017469_110 Hb_017469_110 Hb_013459_020--Hb_017469_110 Hb_000826_070 Hb_000826_070 Hb_013459_020--Hb_000826_070 Hb_011174_020 Hb_011174_020 Hb_013459_020--Hb_011174_020 Hb_001999_140 Hb_001999_140 Hb_013459_020--Hb_001999_140 Hb_001008_070 Hb_001008_070 Hb_013459_020--Hb_001008_070 Hb_002600_060 Hb_002600_060 Hb_005211_020--Hb_002600_060 Hb_005211_020--Hb_000826_070 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_005211_020--Hb_013459_020 Hb_000925_090 Hb_000925_090 Hb_005211_020--Hb_000925_090 Hb_068804_090 Hb_068804_090 Hb_013749_050--Hb_068804_090 Hb_004111_030 Hb_004111_030 Hb_013749_050--Hb_004111_030 Hb_030736_040 Hb_030736_040 Hb_013749_050--Hb_030736_040 Hb_000243_120 Hb_000243_120 Hb_013749_050--Hb_000243_120 Hb_000617_250 Hb_000617_250 Hb_013749_050--Hb_000617_250 Hb_000748_090 Hb_000748_090 Hb_007012_030--Hb_000748_090 Hb_007012_030--Hb_002600_070 Hb_007012_030--Hb_068804_090 Hb_007012_030--Hb_000617_250 Hb_000482_050 Hb_000482_050 Hb_007012_030--Hb_000482_050 Hb_004324_360 Hb_004324_360 Hb_007012_030--Hb_004324_360 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_004884_180 Hb_004884_180 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002600_070--Hb_000748_090 Hb_000771_170 Hb_000771_170 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_002600_070--Hb_000482_050 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.17528 4.57562 4.8756 3.30915 2.492 3.26972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61442 1.81381 1.47725 3.78704 9.94367

CAGE analysis