Hb_025477_050

Information

Type -
Description -
Location Contig25477: 48989-55958
Sequence    

Annotation

kegg
ID rcu:RCOM_1497580
description ATNAP8, putative (EC:3.6.3.44)
nr
ID AIU41635.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8LPQ6
description ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1
trembl
ID A0A097P9P8
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB28 PE=2 SV=1
Gene Ontology
ID GO:0009941
description abc transporter b family member 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26599: 49664-50500 , PASA_asmbl_26600: 52314-52675 , PASA_asmbl_26602: 54361-54655 , PASA_asmbl_26603: 55063-55937 , PASA_asmbl_26604: 54907-55108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025477_050 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_013405_080 0.0561818737 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
3 Hb_007769_040 0.0605672892 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_001472_160 0.0661830723 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
5 Hb_000144_060 0.072123063 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000345_370 0.0797488596 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
7 Hb_001660_120 0.0807571874 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
8 Hb_005250_010 0.0820132379 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
9 Hb_000363_060 0.0826209754 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_033312_010 0.089886951 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000220_210 0.091305417 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
12 Hb_000589_110 0.0923619677 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
13 Hb_000309_020 0.0928374967 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
14 Hb_004884_180 0.0932893783 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
15 Hb_002973_110 0.0944409851 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_002282_070 0.0951400558 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
17 Hb_000479_170 0.0966548698 - - chaperone clpb, putative [Ricinus communis]
18 Hb_003462_060 0.0975362387 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
19 Hb_007192_090 0.0976914372 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
20 Hb_011861_050 0.1000405554 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_025477_050 Hb_025477_050 Hb_013405_080 Hb_013405_080 Hb_025477_050--Hb_013405_080 Hb_007769_040 Hb_007769_040 Hb_025477_050--Hb_007769_040 Hb_001472_160 Hb_001472_160 Hb_025477_050--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_025477_050--Hb_000345_370 Hb_001660_120 Hb_001660_120 Hb_025477_050--Hb_001660_120 Hb_013405_080--Hb_001660_120 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_005250_010 Hb_005250_010 Hb_013405_080--Hb_005250_010 Hb_000033_110 Hb_000033_110 Hb_013405_080--Hb_000033_110 Hb_000320_470 Hb_000320_470 Hb_013405_080--Hb_000320_470 Hb_000589_110 Hb_000589_110 Hb_007769_040--Hb_000589_110 Hb_007769_040--Hb_000345_370 Hb_000479_170 Hb_000479_170 Hb_007769_040--Hb_000479_170 Hb_007769_040--Hb_013405_080 Hb_001220_050 Hb_001220_050 Hb_007769_040--Hb_001220_050 Hb_004884_180 Hb_004884_180 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_000144_060--Hb_000345_370 Hb_000144_060--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000144_060--Hb_011861_050 Hb_002542_160 Hb_002542_160 Hb_000144_060--Hb_002542_160 Hb_002282_070 Hb_002282_070 Hb_000144_060--Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_000345_370--Hb_002542_160 Hb_000345_370--Hb_000220_210 Hb_000345_370--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_000345_370--Hb_016461_030 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_000363_060 Hb_000363_060 Hb_001660_120--Hb_000363_060 Hb_000331_130 Hb_000331_130 Hb_001660_120--Hb_000331_130 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52761 3.47029 5.72324 4.23209 3.52331 3.80308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85068 1.95119 1.66612 3.02822 12.5455

CAGE analysis