Hb_001472_160

Information

Type -
Description -
Location Contig1472: 223316-228315
Sequence    

Annotation

kegg
ID rcu:RCOM_1687070
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012086875.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067JRH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20574 PE=4 SV=1
Gene Ontology
ID GO:0016301
description mitogen-activated protein kinase kinase kinase yoda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11938: 223535-223895 , PASA_asmbl_11939: 225469-226815 , PASA_asmbl_11940: 227388-227565
cDNA
(Sanger)
(ID:Location)		 028_D16.ab1: 222137-222673

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001472_160 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
2 Hb_025477_050 0.0661830723 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_004884_180 0.0768025251 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
4 Hb_000220_210 0.0774601375 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
5 Hb_004225_040 0.0807307192 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
6 Hb_000309_020 0.0808805234 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
7 Hb_002973_110 0.0815979954 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000771_170 0.083429311 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_007192_090 0.084321281 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
10 Hb_000144_060 0.0863219953 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000345_370 0.0875805134 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
12 Hb_000363_060 0.088294374 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_000260_710 0.0893532499 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
14 Hb_002600_070 0.0896170426 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
15 Hb_013405_080 0.0897211204 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
16 Hb_004629_030 0.0920303735 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_007769_040 0.092782068 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_011861_050 0.0928777269 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
19 Hb_013749_050 0.0958029334 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
20 Hb_001377_040 0.0970914862 - - chitinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001472_160 Hb_001472_160 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_004884_180 Hb_004884_180 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_013405_080 Hb_013405_080 Hb_025477_050--Hb_013405_080 Hb_007769_040 Hb_007769_040 Hb_025477_050--Hb_007769_040 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_025477_050--Hb_000345_370 Hb_001660_120 Hb_001660_120 Hb_025477_050--Hb_001660_120 Hb_004884_180--Hb_000220_210 Hb_031042_060 Hb_031042_060 Hb_004884_180--Hb_031042_060 Hb_000771_170 Hb_000771_170 Hb_004884_180--Hb_000771_170 Hb_010174_090 Hb_010174_090 Hb_004884_180--Hb_010174_090 Hb_004884_180--Hb_004225_040 Hb_002542_160 Hb_002542_160 Hb_000220_210--Hb_002542_160 Hb_000220_210--Hb_000309_020 Hb_000220_210--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_000220_210--Hb_001427_040 Hb_004225_040--Hb_000771_170 Hb_000224_220 Hb_000224_220 Hb_004225_040--Hb_000224_220 Hb_001140_180 Hb_001140_180 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060 Hb_000309_020--Hb_002542_160 Hb_000480_040 Hb_000480_040 Hb_000309_020--Hb_000480_040 Hb_000309_020--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_000309_020--Hb_000085_070 Hb_000309_020--Hb_000144_060 Hb_013459_020 Hb_013459_020 Hb_002973_110--Hb_013459_020 Hb_005211_020 Hb_005211_020 Hb_002973_110--Hb_005211_020 Hb_013749_050 Hb_013749_050 Hb_002973_110--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_002973_110--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_002973_110--Hb_002600_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31806 2.21021 3.65301 1.93068 1.81362 1.63826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32773 0.880777 1.08355 1.6483 6.8118

CAGE analysis