Hb_013459_020

Information

Type -
Description -
Location Contig13459: 55890-67662
Sequence    

Annotation

kegg
ID rcu:RCOM_1087100
description hypothetical protein
nr
ID XP_012065757.1
description PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26495 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09769: 56514-57477 , PASA_asmbl_09771: 63708-67864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013459_020 0.0 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
2 Hb_017469_110 0.0495022791 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
3 Hb_000826_070 0.0620955615 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011174_020 0.0704707915 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
5 Hb_002973_110 0.0714636303 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_001999_140 0.071477713 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_001008_070 0.0753091456 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
8 Hb_005276_200 0.075782512 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
9 Hb_005211_020 0.0758988276 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
10 Hb_012022_060 0.0774245391 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
11 Hb_005260_030 0.0801094725 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
12 Hb_000795_040 0.0803028553 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
13 Hb_007012_030 0.080484568 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
14 Hb_000664_120 0.0805166809 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
15 Hb_003849_280 0.0807405532 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
16 Hb_000568_050 0.081193204 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
17 Hb_003417_040 0.0813814862 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
18 Hb_033312_130 0.0819677545 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
19 Hb_002357_070 0.0821301023 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
20 Hb_000363_300 0.0827786041 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_013459_020 Hb_013459_020 Hb_017469_110 Hb_017469_110 Hb_013459_020--Hb_017469_110 Hb_000826_070 Hb_000826_070 Hb_013459_020--Hb_000826_070 Hb_011174_020 Hb_011174_020 Hb_013459_020--Hb_011174_020 Hb_002973_110 Hb_002973_110 Hb_013459_020--Hb_002973_110 Hb_001999_140 Hb_001999_140 Hb_013459_020--Hb_001999_140 Hb_001008_070 Hb_001008_070 Hb_013459_020--Hb_001008_070 Hb_017469_110--Hb_011174_020 Hb_000795_040 Hb_000795_040 Hb_017469_110--Hb_000795_040 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_002581_010 Hb_002581_010 Hb_017469_110--Hb_002581_010 Hb_017469_110--Hb_001008_070 Hb_000826_070--Hb_001999_140 Hb_000664_120 Hb_000664_120 Hb_000826_070--Hb_000664_120 Hb_005211_020 Hb_005211_020 Hb_000826_070--Hb_005211_020 Hb_000568_050 Hb_000568_050 Hb_000826_070--Hb_000568_050 Hb_012055_110 Hb_012055_110 Hb_000826_070--Hb_012055_110 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_002973_110--Hb_005211_020 Hb_013749_050 Hb_013749_050 Hb_002973_110--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_002973_110--Hb_007012_030 Hb_001472_160 Hb_001472_160 Hb_002973_110--Hb_001472_160 Hb_002600_070 Hb_002600_070 Hb_002973_110--Hb_002600_070 Hb_001999_140--Hb_000664_120 Hb_001221_180 Hb_001221_180 Hb_001999_140--Hb_001221_180 Hb_003093_040 Hb_003093_040 Hb_001999_140--Hb_003093_040 Hb_002357_070 Hb_002357_070 Hb_001999_140--Hb_002357_070 Hb_001008_070--Hb_002581_010 Hb_000181_100 Hb_000181_100 Hb_001008_070--Hb_000181_100 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_000320_470 Hb_000320_470 Hb_001008_070--Hb_000320_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45387 5.83207 5.49167 4.15738 3.41609 3.85538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66071 2.67542 1.7417 5.07717 8.99124

CAGE analysis