Hb_000181_100

Information

Type -
Description -
Location Contig181: 73858-76846
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11660g
description POPTRDRAFT_660905; hypothetical protein
nr
ID XP_012076402.1
description PREDICTED: protein starmaker [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LN41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15313 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17500: 74594-76828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_100 0.0 - - PREDICTED: protein starmaker [Jatropha curcas]
2 Hb_000320_470 0.0541401708 - - calcium-dependent protein kinase [Hevea brasiliensis]
3 Hb_004800_180 0.0606929265 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
4 Hb_001008_070 0.0653908731 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
5 Hb_005601_020 0.0714906111 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
6 Hb_026053_040 0.0722661194 - - conserved hypothetical protein [Ricinus communis]
7 Hb_031091_020 0.0753577227 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_001008_050 0.0759012084 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
9 Hb_000103_570 0.0784816505 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
10 Hb_002581_010 0.0797181563 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
11 Hb_000568_050 0.0820731361 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
12 Hb_008387_020 0.0822633799 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
13 Hb_000879_040 0.0832151725 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
14 Hb_012055_110 0.0847365441 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
15 Hb_085742_010 0.0851045575 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
16 Hb_001221_180 0.0860365576 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_002027_080 0.0879819152 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
18 Hb_007765_100 0.0881042365 - - PREDICTED: helicase SKI2W [Jatropha curcas]
19 Hb_156850_090 0.0884075327 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_000958_050 0.0884250351 - - hypothetical protein JCGZ_16781 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_100 Hb_000181_100 Hb_000320_470 Hb_000320_470 Hb_000181_100--Hb_000320_470 Hb_004800_180 Hb_004800_180 Hb_000181_100--Hb_004800_180 Hb_001008_070 Hb_001008_070 Hb_000181_100--Hb_001008_070 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_026053_040 Hb_026053_040 Hb_000181_100--Hb_026053_040 Hb_031091_020 Hb_031091_020 Hb_000181_100--Hb_031091_020 Hb_000320_470--Hb_026053_040 Hb_001008_050 Hb_001008_050 Hb_000320_470--Hb_001008_050 Hb_000320_470--Hb_001008_070 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010 Hb_000103_570 Hb_000103_570 Hb_004800_180--Hb_000103_570 Hb_000864_030 Hb_000864_030 Hb_004800_180--Hb_000864_030 Hb_000563_420 Hb_000563_420 Hb_004800_180--Hb_000563_420 Hb_000665_120 Hb_000665_120 Hb_004800_180--Hb_000665_120 Hb_000679_020 Hb_000679_020 Hb_004800_180--Hb_000679_020 Hb_002581_010 Hb_002581_010 Hb_001008_070--Hb_002581_010 Hb_017469_110 Hb_017469_110 Hb_001008_070--Hb_017469_110 Hb_000795_040 Hb_000795_040 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_000254_100 Hb_000254_100 Hb_005601_020--Hb_000254_100 Hb_005601_020--Hb_031091_020 Hb_004109_120 Hb_004109_120 Hb_005601_020--Hb_004109_120 Hb_001014_100 Hb_001014_100 Hb_005601_020--Hb_001014_100 Hb_000207_300 Hb_000207_300 Hb_005601_020--Hb_000207_300 Hb_026053_040--Hb_017469_110 Hb_026053_040--Hb_001008_070 Hb_000033_110 Hb_000033_110 Hb_026053_040--Hb_000033_110 Hb_013405_080 Hb_013405_080 Hb_026053_040--Hb_013405_080 Hb_002027_080 Hb_002027_080 Hb_031091_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_031091_020--Hb_001518_080 Hb_003186_020 Hb_003186_020 Hb_031091_020--Hb_003186_020 Hb_000635_090 Hb_000635_090 Hb_031091_020--Hb_000635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3863 15.0993 18.1795 12.4908 12.4443 12.8026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.07489 7.05979 10.3817 17.2173 26.2457

CAGE analysis