Hb_026053_040

Information

Type -
Description -
Location Contig26053: 35932-38665
Sequence    

Annotation

kegg
ID rcu:RCOM_1236940
description hypothetical protein
nr
ID XP_002522935.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3UHX0
description Nucleolar protein 8 OS=Mus musculus GN=Nol8 PE=1 SV=2
trembl
ID B9SAB6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1236940 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding family isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27170: 35661-38529 , PASA_asmbl_27171: 36703-37568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026053_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000320_470 0.0619218147 - - calcium-dependent protein kinase [Hevea brasiliensis]
3 Hb_017469_110 0.0714191593 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
4 Hb_000181_100 0.0722661194 - - PREDICTED: protein starmaker [Jatropha curcas]
5 Hb_001008_070 0.0800141218 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
6 Hb_000033_110 0.0803714867 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
7 Hb_013405_080 0.08204448 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
8 Hb_005211_020 0.0826119324 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
9 Hb_002233_130 0.0826659615 - - transporter, putative [Ricinus communis]
10 Hb_004324_330 0.0829326183 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
11 Hb_002328_040 0.0830146673 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
12 Hb_000300_470 0.086133865 - - PREDICTED: nucleolin-like [Jatropha curcas]
13 Hb_013459_020 0.0870480925 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
14 Hb_005250_010 0.0872791554 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
15 Hb_001244_150 0.0881169288 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
16 Hb_001623_280 0.0888504275 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
17 Hb_002973_110 0.0902694951 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000568_050 0.0912064318 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
19 Hb_005701_050 0.0914708871 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
20 Hb_000608_300 0.0917270758 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_026053_040 Hb_026053_040 Hb_000320_470 Hb_000320_470 Hb_026053_040--Hb_000320_470 Hb_017469_110 Hb_017469_110 Hb_026053_040--Hb_017469_110 Hb_000181_100 Hb_000181_100 Hb_026053_040--Hb_000181_100 Hb_001008_070 Hb_001008_070 Hb_026053_040--Hb_001008_070 Hb_000033_110 Hb_000033_110 Hb_026053_040--Hb_000033_110 Hb_013405_080 Hb_013405_080 Hb_026053_040--Hb_013405_080 Hb_000320_470--Hb_000181_100 Hb_001008_050 Hb_001008_050 Hb_000320_470--Hb_001008_050 Hb_000320_470--Hb_001008_070 Hb_031091_020 Hb_031091_020 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_011174_020 Hb_011174_020 Hb_017469_110--Hb_011174_020 Hb_000795_040 Hb_000795_040 Hb_017469_110--Hb_000795_040 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_002581_010 Hb_002581_010 Hb_017469_110--Hb_002581_010 Hb_017469_110--Hb_001008_070 Hb_004800_180 Hb_004800_180 Hb_000181_100--Hb_004800_180 Hb_000181_100--Hb_001008_070 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_000181_100--Hb_031091_020 Hb_001008_070--Hb_002581_010 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_000033_110--Hb_013405_080 Hb_009252_040 Hb_009252_040 Hb_000033_110--Hb_009252_040 Hb_000033_110--Hb_000320_470 Hb_004003_040 Hb_004003_040 Hb_000033_110--Hb_004003_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100 Hb_001660_120 Hb_001660_120 Hb_013405_080--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_013405_080--Hb_025477_050 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_005250_010 Hb_005250_010 Hb_013405_080--Hb_005250_010 Hb_013405_080--Hb_000320_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.94457 11.4026 14.8758 10.1593 11.7115 8.95764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46973 6.55999 6.73395 11.8123 24.5139

CAGE analysis