Hb_089246_010

Information

Type -
Description -
Location Contig89246: 5932-10854
Sequence    

Annotation

kegg
ID rcu:RCOM_1460700
description Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3)
nr
ID KDP42621.1
description hypothetical protein JCGZ_24395 [Jatropha curcas]
swissprot
ID D1CDT8
description ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1
trembl
ID A0A067L2C1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24395 PE=3 SV=1
Gene Ontology
ID GO:0009941
description atp-dependent zinc metalloprotease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61701: 6449-10705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089246_010 0.0 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
2 Hb_001008_070 0.0736282768 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
3 Hb_000320_470 0.075904175 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_001008_050 0.086102671 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
5 Hb_000181_100 0.0906976421 - - PREDICTED: protein starmaker [Jatropha curcas]
6 Hb_031091_020 0.0926536906 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
7 Hb_000022_190 0.0937692569 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
8 Hb_000245_150 0.0947447082 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
9 Hb_007035_040 0.0954363538 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
10 Hb_085742_010 0.1038888813 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
11 Hb_002581_010 0.1040220596 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
12 Hb_098209_010 0.1041213105 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
13 Hb_002411_190 0.1043901209 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_000453_030 0.1045869703 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
15 Hb_000205_260 0.1052233271 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
16 Hb_002600_070 0.1058989445 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
17 Hb_004324_360 0.1059220426 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
18 Hb_008642_060 0.1068550155 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
19 Hb_000457_230 0.1071522222 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
20 Hb_004003_040 0.1075289648 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_089246_010 Hb_089246_010 Hb_001008_070 Hb_001008_070 Hb_089246_010--Hb_001008_070 Hb_000320_470 Hb_000320_470 Hb_089246_010--Hb_000320_470 Hb_001008_050 Hb_001008_050 Hb_089246_010--Hb_001008_050 Hb_000181_100 Hb_000181_100 Hb_089246_010--Hb_000181_100 Hb_031091_020 Hb_031091_020 Hb_089246_010--Hb_031091_020 Hb_000022_190 Hb_000022_190 Hb_089246_010--Hb_000022_190 Hb_002581_010 Hb_002581_010 Hb_001008_070--Hb_002581_010 Hb_001008_070--Hb_000181_100 Hb_017469_110 Hb_017469_110 Hb_001008_070--Hb_017469_110 Hb_000795_040 Hb_000795_040 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_001008_070--Hb_000320_470 Hb_000320_470--Hb_000181_100 Hb_026053_040 Hb_026053_040 Hb_000320_470--Hb_026053_040 Hb_000320_470--Hb_001008_050 Hb_000320_470--Hb_031091_020 Hb_001008_050--Hb_000181_100 Hb_002391_050 Hb_002391_050 Hb_001008_050--Hb_002391_050 Hb_001935_160 Hb_001935_160 Hb_001008_050--Hb_001935_160 Hb_001008_050--Hb_001008_070 Hb_004800_180 Hb_004800_180 Hb_000181_100--Hb_004800_180 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_000181_100--Hb_026053_040 Hb_000181_100--Hb_031091_020 Hb_002027_080 Hb_002027_080 Hb_031091_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_031091_020--Hb_001518_080 Hb_003186_020 Hb_003186_020 Hb_031091_020--Hb_003186_020 Hb_000635_090 Hb_000635_090 Hb_031091_020--Hb_000635_090 Hb_000069_570 Hb_000069_570 Hb_000022_190--Hb_000069_570 Hb_001018_090 Hb_001018_090 Hb_000022_190--Hb_001018_090 Hb_008014_040 Hb_008014_040 Hb_000022_190--Hb_008014_040 Hb_000103_340 Hb_000103_340 Hb_000022_190--Hb_000103_340 Hb_000022_190--Hb_000635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.0161 6.7778 9.05178 4.61941 3.55245 7.41066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69318 2.08535 3.75018 5.46621 10.4629

CAGE analysis