Hb_000022_190

Information

Type -
Description -
Location Contig22: 287578-290133
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26170g
description POPTRDRAFT_561808; hypothetical protein
nr
ID XP_012077473.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
swissprot
ID Q9LUJ2
description Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
trembl
ID A0A067KDS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07808 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_190 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
2 Hb_000069_570 0.0892606617 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
3 Hb_089246_010 0.0937692569 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
4 Hb_001018_090 0.0957063295 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
5 Hb_008014_040 0.0967774599 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
6 Hb_000103_340 0.0989984488 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
7 Hb_000635_090 0.099220079 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
8 Hb_041327_020 0.0993929066 - - conserved hypothetical protein [Ricinus communis]
9 Hb_171334_010 0.100077517 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
10 Hb_005895_010 0.1008806596 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
11 Hb_000214_050 0.1010975588 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
12 Hb_003186_020 0.1031037818 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
13 Hb_001377_110 0.1049806906 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
14 Hb_004003_040 0.1050690874 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_031091_020 0.1055847955 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_006501_090 0.1070184844 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
17 Hb_004096_240 0.1072440602 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
18 Hb_162275_040 0.107731023 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000347_040 0.1080604393 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
20 Hb_098209_010 0.1085580925 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]

Gene co-expression network

sample Hb_000022_190 Hb_000022_190 Hb_000069_570 Hb_000069_570 Hb_000022_190--Hb_000069_570 Hb_089246_010 Hb_089246_010 Hb_000022_190--Hb_089246_010 Hb_001018_090 Hb_001018_090 Hb_000022_190--Hb_001018_090 Hb_008014_040 Hb_008014_040 Hb_000022_190--Hb_008014_040 Hb_000103_340 Hb_000103_340 Hb_000022_190--Hb_000103_340 Hb_000635_090 Hb_000635_090 Hb_000022_190--Hb_000635_090 Hb_000069_570--Hb_008014_040 Hb_005048_140 Hb_005048_140 Hb_000069_570--Hb_005048_140 Hb_116420_040 Hb_116420_040 Hb_000069_570--Hb_116420_040 Hb_010315_020 Hb_010315_020 Hb_000069_570--Hb_010315_020 Hb_162275_040 Hb_162275_040 Hb_000069_570--Hb_162275_040 Hb_001008_070 Hb_001008_070 Hb_089246_010--Hb_001008_070 Hb_000320_470 Hb_000320_470 Hb_089246_010--Hb_000320_470 Hb_001008_050 Hb_001008_050 Hb_089246_010--Hb_001008_050 Hb_000181_100 Hb_000181_100 Hb_089246_010--Hb_000181_100 Hb_031091_020 Hb_031091_020 Hb_089246_010--Hb_031091_020 Hb_001018_090--Hb_000103_340 Hb_000363_310 Hb_000363_310 Hb_001018_090--Hb_000363_310 Hb_000567_070 Hb_000567_070 Hb_001018_090--Hb_000567_070 Hb_001018_090--Hb_000635_090 Hb_003747_120 Hb_003747_120 Hb_001018_090--Hb_003747_120 Hb_000111_170 Hb_000111_170 Hb_001018_090--Hb_000111_170 Hb_008014_040--Hb_010315_020 Hb_000212_420 Hb_000212_420 Hb_008014_040--Hb_000212_420 Hb_008511_020 Hb_008511_020 Hb_008014_040--Hb_008511_020 Hb_022250_010 Hb_022250_010 Hb_008014_040--Hb_022250_010 Hb_159809_030 Hb_159809_030 Hb_008014_040--Hb_159809_030 Hb_000214_050 Hb_000214_050 Hb_000103_340--Hb_000214_050 Hb_000103_340--Hb_000635_090 Hb_005214_140 Hb_005214_140 Hb_000103_340--Hb_005214_140 Hb_006275_020 Hb_006275_020 Hb_000103_340--Hb_006275_020 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010 Hb_001518_080 Hb_001518_080 Hb_000635_090--Hb_001518_080 Hb_002027_080 Hb_002027_080 Hb_000635_090--Hb_002027_080 Hb_006913_020 Hb_006913_020 Hb_000635_090--Hb_006913_020 Hb_000270_190 Hb_000270_190 Hb_000635_090--Hb_000270_190 Hb_000773_040 Hb_000773_040 Hb_000635_090--Hb_000773_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208125 0.286927 0.377679 0.301796 0.199997 0.381088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0862448 0.149304 0.18121 0.167061 0.404117

CAGE analysis