Hb_003747_120

Information

Type -
Description -
Location Contig3747: 111494-122804
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011031mg
description hypothetical protein
nr
ID XP_012067407.1
description PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
swissprot
ID Q3EBD3
description DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana GN=RH41 PE=2 SV=1
trembl
ID A0A067L3T3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26911 PE=4 SV=1
Gene Ontology
ID GO:0008233
description otu domain-containing protein ddb_g0284757 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38212: 112322-115951 , PASA_asmbl_38214: 119658-119905 , PASA_asmbl_38215: 119996-120492 , PASA_asmbl_38217: 121907-122040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_120 0.0 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
2 Hb_000111_170 0.0692572414 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
3 Hb_007283_010 0.0791740165 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
4 Hb_000085_210 0.0823116386 - - DNA topoisomerase type I, putative [Ricinus communis]
5 Hb_004631_150 0.0846492864 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
6 Hb_008059_010 0.0848585465 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
7 Hb_031284_010 0.0864091695 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
8 Hb_004324_330 0.087474407 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
9 Hb_001018_090 0.0875780348 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
10 Hb_000120_210 0.0882591791 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
11 Hb_005523_020 0.0884966993 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
12 Hb_005288_070 0.0886362708 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
13 Hb_001244_150 0.0902921374 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
14 Hb_003225_020 0.0905925444 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
15 Hb_000375_390 0.0914480616 - - poly-A binding protein, putative [Ricinus communis]
16 Hb_000363_310 0.0914822218 - - DNA topoisomerase type I, putative [Ricinus communis]
17 Hb_000107_340 0.0925507061 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
18 Hb_000115_280 0.0926100699 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
19 Hb_000282_090 0.0934583053 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_004096_240 0.0944654838 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_120 Hb_003747_120 Hb_000111_170 Hb_000111_170 Hb_003747_120--Hb_000111_170 Hb_007283_010 Hb_007283_010 Hb_003747_120--Hb_007283_010 Hb_000085_210 Hb_000085_210 Hb_003747_120--Hb_000085_210 Hb_004631_150 Hb_004631_150 Hb_003747_120--Hb_004631_150 Hb_008059_010 Hb_008059_010 Hb_003747_120--Hb_008059_010 Hb_031284_010 Hb_031284_010 Hb_003747_120--Hb_031284_010 Hb_000111_170--Hb_000085_210 Hb_000363_310 Hb_000363_310 Hb_000111_170--Hb_000363_310 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_030414_040 Hb_030414_040 Hb_000111_170--Hb_030414_040 Hb_005288_070 Hb_005288_070 Hb_000111_170--Hb_005288_070 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010 Hb_007283_010--Hb_005288_070 Hb_000457_230 Hb_000457_230 Hb_007283_010--Hb_000457_230 Hb_007283_010--Hb_030414_040 Hb_004324_330 Hb_004324_330 Hb_007283_010--Hb_004324_330 Hb_007283_010--Hb_031284_010 Hb_000205_260 Hb_000205_260 Hb_007283_010--Hb_000205_260 Hb_000795_040 Hb_000795_040 Hb_000085_210--Hb_000795_040 Hb_000085_210--Hb_005288_070 Hb_000676_330 Hb_000676_330 Hb_000085_210--Hb_000676_330 Hb_017469_110 Hb_017469_110 Hb_000085_210--Hb_017469_110 Hb_001439_220 Hb_001439_220 Hb_000085_210--Hb_001439_220 Hb_000958_070 Hb_000958_070 Hb_004631_150--Hb_000958_070 Hb_000836_290 Hb_000836_290 Hb_004631_150--Hb_000836_290 Hb_002014_040 Hb_002014_040 Hb_004631_150--Hb_002014_040 Hb_000362_170 Hb_000362_170 Hb_004631_150--Hb_000362_170 Hb_001244_150 Hb_001244_150 Hb_004631_150--Hb_001244_150 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_000115_280 Hb_000115_280 Hb_008059_010--Hb_000115_280 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_008059_010--Hb_000205_260 Hb_031284_010--Hb_000115_280 Hb_003186_020 Hb_003186_020 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.49066 6.41912 7.39579 5.06563 6.25263 4.61359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58441 4.75669 2.78856 3.30702 8.34235

CAGE analysis