Hb_007765_100

Information

Type -
Description -
Location Contig7765: 62958-86630
Sequence    

Annotation

kegg
ID rcu:RCOM_0730930
description helicase, putative
nr
ID XP_012068365.1
description PREDICTED: helicase SKI2W [Jatropha curcas]
swissprot
ID F4JAA5
description ATP-dependent RNA helicase SKI2 OS=Arabidopsis thaliana GN=SKI2 PE=1 SV=1
trembl
ID A0A067LDJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08533 PE=4 SV=1
Gene Ontology
ID GO:0005773
description atp-dependent rna helicase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57832: 62983-74463 , PASA_asmbl_57833: 74522-85563 , PASA_asmbl_57835: 85653-86614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007765_100 0.0 - - PREDICTED: helicase SKI2W [Jatropha curcas]
2 Hb_000665_120 0.0543279833 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
3 Hb_008059_010 0.0565267476 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
4 Hb_170416_010 0.0602739709 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
5 Hb_002218_090 0.0649406123 - - Poly(rC)-binding protein, putative [Ricinus communis]
6 Hb_000363_310 0.0651042484 - - DNA topoisomerase type I, putative [Ricinus communis]
7 Hb_001226_150 0.0656030308 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
8 Hb_006483_110 0.0671426737 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
9 Hb_001377_190 0.0685615697 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
10 Hb_007007_120 0.0687461444 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
11 Hb_000039_150 0.0700219535 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
12 Hb_053079_020 0.0712152908 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
13 Hb_002811_270 0.0713199617 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
14 Hb_005588_080 0.0717948362 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
15 Hb_000864_030 0.0728265793 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
16 Hb_007426_110 0.0733513152 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
17 Hb_005867_070 0.0739120362 - - DNA binding protein, putative [Ricinus communis]
18 Hb_031284_010 0.0740849879 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
19 Hb_002263_020 0.0745275715 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_000214_050 0.0768022998 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007765_100 Hb_007765_100 Hb_000665_120 Hb_000665_120 Hb_007765_100--Hb_000665_120 Hb_008059_010 Hb_008059_010 Hb_007765_100--Hb_008059_010 Hb_170416_010 Hb_170416_010 Hb_007765_100--Hb_170416_010 Hb_002218_090 Hb_002218_090 Hb_007765_100--Hb_002218_090 Hb_000363_310 Hb_000363_310 Hb_007765_100--Hb_000363_310 Hb_001226_150 Hb_001226_150 Hb_007765_100--Hb_001226_150 Hb_000797_040 Hb_000797_040 Hb_000665_120--Hb_000797_040 Hb_028960_020 Hb_028960_020 Hb_000665_120--Hb_028960_020 Hb_002205_030 Hb_002205_030 Hb_000665_120--Hb_002205_030 Hb_000665_120--Hb_008059_010 Hb_002811_270 Hb_002811_270 Hb_000665_120--Hb_002811_270 Hb_031284_010 Hb_031284_010 Hb_008059_010--Hb_031284_010 Hb_000115_280 Hb_000115_280 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_001761_120 Hb_001761_120 Hb_170416_010--Hb_001761_120 Hb_170416_010--Hb_001226_150 Hb_007007_120 Hb_007007_120 Hb_170416_010--Hb_007007_120 Hb_003531_080 Hb_003531_080 Hb_170416_010--Hb_003531_080 Hb_010931_070 Hb_010931_070 Hb_170416_010--Hb_010931_070 Hb_007426_110 Hb_007426_110 Hb_002218_090--Hb_007426_110 Hb_000343_250 Hb_000343_250 Hb_002218_090--Hb_000343_250 Hb_000329_370 Hb_000329_370 Hb_002218_090--Hb_000329_370 Hb_006483_110 Hb_006483_110 Hb_002218_090--Hb_006483_110 Hb_005867_070 Hb_005867_070 Hb_002218_090--Hb_005867_070 Hb_000347_430 Hb_000347_430 Hb_000363_310--Hb_000347_430 Hb_001377_190 Hb_001377_190 Hb_000363_310--Hb_001377_190 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_000111_170 Hb_000111_170 Hb_000363_310--Hb_000111_170 Hb_000749_010 Hb_000749_010 Hb_000363_310--Hb_000749_010 Hb_001226_150--Hb_005867_070 Hb_005000_170 Hb_005000_170 Hb_001226_150--Hb_005000_170 Hb_000339_040 Hb_000339_040 Hb_001226_150--Hb_000339_040 Hb_001226_150--Hb_007007_120 Hb_007894_150 Hb_007894_150 Hb_001226_150--Hb_007894_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19107 5.40204 7.11157 4.57006 5.42789 4.56756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25932 4.04912 4.87862 5.00244 8.27779

CAGE analysis