Hb_000797_040

Information

Type -
Description -
Location Contig797: 55226-61641
Sequence    

Annotation

kegg
ID rcu:RCOM_1682340
description splicing factor yt521-B, putative
nr
ID XP_012087048.1
description PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
swissprot
ID Q0DA50
description Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1
trembl
ID A0A067K177
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20705 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58579: 55254-61693 , PASA_asmbl_58580: 60074-60606 , PASA_asmbl_58581: 55309-61504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000797_040 0.0 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
2 Hb_000665_120 0.05861656 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
3 Hb_002205_030 0.0608043644 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
4 Hb_028960_020 0.0622359206 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
5 Hb_004310_140 0.0649556764 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
6 Hb_002218_090 0.0689902798 - - Poly(rC)-binding protein, putative [Ricinus communis]
7 Hb_007426_110 0.0707315569 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
8 Hb_021374_030 0.0709299445 - - hypothetical protein RCOM_0351490 [Ricinus communis]
9 Hb_000346_060 0.0722402366 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
10 Hb_006483_110 0.0726698743 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
11 Hb_008059_010 0.0743348418 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
12 Hb_004003_040 0.0745721128 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_005730_040 0.0765632158 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
14 Hb_002205_230 0.0769761887 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_002592_060 0.0774452044 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003517_040 0.078862877 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
17 Hb_000749_010 0.0789741768 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
18 Hb_007765_100 0.0799109642 - - PREDICTED: helicase SKI2W [Jatropha curcas]
19 Hb_005405_020 0.0810095166 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
20 Hb_005867_070 0.0810709537 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000797_040 Hb_000797_040 Hb_000665_120 Hb_000665_120 Hb_000797_040--Hb_000665_120 Hb_002205_030 Hb_002205_030 Hb_000797_040--Hb_002205_030 Hb_028960_020 Hb_028960_020 Hb_000797_040--Hb_028960_020 Hb_004310_140 Hb_004310_140 Hb_000797_040--Hb_004310_140 Hb_002218_090 Hb_002218_090 Hb_000797_040--Hb_002218_090 Hb_007426_110 Hb_007426_110 Hb_000797_040--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000665_120--Hb_007765_100 Hb_000665_120--Hb_028960_020 Hb_000665_120--Hb_002205_030 Hb_008059_010 Hb_008059_010 Hb_000665_120--Hb_008059_010 Hb_002811_270 Hb_002811_270 Hb_000665_120--Hb_002811_270 Hb_057688_010 Hb_057688_010 Hb_002205_030--Hb_057688_010 Hb_002205_030--Hb_028960_020 Hb_003517_040 Hb_003517_040 Hb_002205_030--Hb_003517_040 Hb_001377_190 Hb_001377_190 Hb_002205_030--Hb_001377_190 Hb_028960_020--Hb_007426_110 Hb_006483_110 Hb_006483_110 Hb_028960_020--Hb_006483_110 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_004310_140--Hb_002205_030 Hb_003038_200 Hb_003038_200 Hb_004310_140--Hb_003038_200 Hb_002592_060 Hb_002592_060 Hb_004310_140--Hb_002592_060 Hb_000174_170 Hb_000174_170 Hb_004310_140--Hb_000174_170 Hb_003440_060 Hb_003440_060 Hb_004310_140--Hb_003440_060 Hb_002218_090--Hb_007426_110 Hb_000343_250 Hb_000343_250 Hb_002218_090--Hb_000343_250 Hb_002218_090--Hb_007765_100 Hb_000329_370 Hb_000329_370 Hb_002218_090--Hb_000329_370 Hb_002218_090--Hb_006483_110 Hb_005867_070 Hb_005867_070 Hb_002218_090--Hb_005867_070 Hb_007426_110--Hb_006483_110 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002263_020 Hb_002263_020 Hb_007426_110--Hb_002263_020 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81386 9.94833 13.3512 9.17361 8.4406 13.673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3981 8.72836 7.30659 10.7148 17.1025

CAGE analysis