Hb_004310_140

Information

Type -
Description -
Location Contig4310: 111023-129747
Sequence    

Annotation

kegg
ID rcu:RCOM_1607610
description Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative (EC:6.1.1.14)
nr
ID XP_012083708.1
description PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q8L785
description Glycine--tRNA ligase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLYRS-2 PE=2 SV=1
trembl
ID A0A067K9B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14636 PE=3 SV=1
Gene Ontology
ID GO:0004820
description glycine--trna ligase chloroplastic mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42257: 111161-112050 , PASA_asmbl_42258: 112164-113690 , PASA_asmbl_42259: 117525-123080 , PASA_asmbl_42261: 124367-129778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_140 0.0 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000797_040 0.0649556764 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
3 Hb_002205_030 0.0749304655 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
4 Hb_003038_200 0.0760818643 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
5 Hb_002592_060 0.0762735895 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000174_170 0.0779064512 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
7 Hb_003440_060 0.0840089029 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
8 Hb_000317_050 0.0849551193 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
9 Hb_006483_110 0.0859913129 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
10 Hb_000075_040 0.0868858728 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
11 Hb_004450_040 0.087104908 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
12 Hb_001040_100 0.0871860902 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
13 Hb_028960_020 0.087743616 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
14 Hb_000749_010 0.0878391097 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
15 Hb_000679_020 0.0886841212 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
16 Hb_008059_010 0.0889369201 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
17 Hb_000723_100 0.0891768589 - - phosphoglycerate kinase, putative [Ricinus communis]
18 Hb_031284_010 0.0894042602 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
19 Hb_001442_040 0.0897875554 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
20 Hb_002205_230 0.0898623419 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004310_140 Hb_004310_140 Hb_000797_040 Hb_000797_040 Hb_004310_140--Hb_000797_040 Hb_002205_030 Hb_002205_030 Hb_004310_140--Hb_002205_030 Hb_003038_200 Hb_003038_200 Hb_004310_140--Hb_003038_200 Hb_002592_060 Hb_002592_060 Hb_004310_140--Hb_002592_060 Hb_000174_170 Hb_000174_170 Hb_004310_140--Hb_000174_170 Hb_003440_060 Hb_003440_060 Hb_004310_140--Hb_003440_060 Hb_000665_120 Hb_000665_120 Hb_000797_040--Hb_000665_120 Hb_000797_040--Hb_002205_030 Hb_028960_020 Hb_028960_020 Hb_000797_040--Hb_028960_020 Hb_002218_090 Hb_002218_090 Hb_000797_040--Hb_002218_090 Hb_007426_110 Hb_007426_110 Hb_000797_040--Hb_007426_110 Hb_057688_010 Hb_057688_010 Hb_002205_030--Hb_057688_010 Hb_002205_030--Hb_028960_020 Hb_003517_040 Hb_003517_040 Hb_002205_030--Hb_003517_040 Hb_002205_030--Hb_000665_120 Hb_001377_190 Hb_001377_190 Hb_002205_030--Hb_001377_190 Hb_071188_010 Hb_071188_010 Hb_003038_200--Hb_071188_010 Hb_000679_020 Hb_000679_020 Hb_003038_200--Hb_000679_020 Hb_000221_140 Hb_000221_140 Hb_003038_200--Hb_000221_140 Hb_003038_200--Hb_000174_170 Hb_001662_140 Hb_001662_140 Hb_003038_200--Hb_001662_140 Hb_001021_150 Hb_001021_150 Hb_002592_060--Hb_001021_150 Hb_004846_220 Hb_004846_220 Hb_002592_060--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_002592_060--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_006483_110 Hb_006483_110 Hb_002592_060--Hb_006483_110 Hb_000864_030 Hb_000864_030 Hb_000174_170--Hb_000864_030 Hb_000165_040 Hb_000165_040 Hb_000174_170--Hb_000165_040 Hb_000174_170--Hb_006483_110 Hb_000174_170--Hb_000679_020 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_008059_010 Hb_008059_010 Hb_000174_170--Hb_008059_010 Hb_002893_070 Hb_002893_070 Hb_003440_060--Hb_002893_070 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_000723_100 Hb_000723_100 Hb_003440_060--Hb_000723_100 Hb_004032_410 Hb_004032_410 Hb_003440_060--Hb_004032_410 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91882 4.83338 6.82721 4.06449 6.41107 6.86183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.4023 5.71838 2.99424 6.17946 10.1648

CAGE analysis