Hb_000864_030

Information

Type -
Description -
Location Contig864: 71861-80682
Sequence    

Annotation

kegg
ID rcu:RCOM_1154620
description Polyadenylation factor subunit, putative (EC:2.3.1.48)
nr
ID XP_012079331.1
description PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
swissprot
ID Q8BHJ5
description F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=1 SV=1
trembl
ID A0A067KAH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12479 PE=4 SV=1
Gene Ontology
ID GO:0004402
description f-box-like wd repeat-containing protein tbl1xr1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60864: 78727-80773 , PASA_asmbl_60865: 72090-74980 , PASA_asmbl_60866: 72021-80323 , PASA_asmbl_60867: 71878-80374 , PASA_asmbl_60868: 72067-73335 , PASA_asmbl_60869: 78912-79284 , PASA_asmbl_60870: 78049-78290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000864_030 0.0 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
2 Hb_000679_020 0.0498441104 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
3 Hb_000174_170 0.0590085886 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
4 Hb_004800_180 0.0636542428 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
5 Hb_008059_010 0.0673767773 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
6 Hb_000563_420 0.0674773306 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
7 Hb_000115_280 0.0706115346 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
8 Hb_001492_030 0.0708626904 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
9 Hb_007765_100 0.0728265793 - - PREDICTED: helicase SKI2W [Jatropha curcas]
10 Hb_000563_130 0.0755696419 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
11 Hb_031284_010 0.0758077501 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
12 Hb_017151_010 0.0776825705 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
13 Hb_007426_110 0.0780987815 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
14 Hb_002218_090 0.0800378603 - - Poly(rC)-binding protein, putative [Ricinus communis]
15 Hb_006483_110 0.0802609204 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
16 Hb_025557_050 0.0806403757 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
17 Hb_001379_110 0.0809398824 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
18 Hb_000917_320 0.0822485098 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
19 Hb_000671_070 0.0843176352 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
20 Hb_132840_010 0.0843698011 - - serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000864_030 Hb_000864_030 Hb_000679_020 Hb_000679_020 Hb_000864_030--Hb_000679_020 Hb_000174_170 Hb_000174_170 Hb_000864_030--Hb_000174_170 Hb_004800_180 Hb_004800_180 Hb_000864_030--Hb_004800_180 Hb_008059_010 Hb_008059_010 Hb_000864_030--Hb_008059_010 Hb_000563_420 Hb_000563_420 Hb_000864_030--Hb_000563_420 Hb_000115_280 Hb_000115_280 Hb_000864_030--Hb_000115_280 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000679_020--Hb_000174_170 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100 Hb_000165_040 Hb_000165_040 Hb_000174_170--Hb_000165_040 Hb_006483_110 Hb_006483_110 Hb_000174_170--Hb_006483_110 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_000174_170--Hb_008059_010 Hb_000103_570 Hb_000103_570 Hb_004800_180--Hb_000103_570 Hb_000181_100 Hb_000181_100 Hb_004800_180--Hb_000181_100 Hb_004800_180--Hb_000563_420 Hb_000665_120 Hb_000665_120 Hb_004800_180--Hb_000665_120 Hb_004800_180--Hb_000679_020 Hb_031284_010 Hb_031284_010 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_055235_020 Hb_055235_020 Hb_000563_420--Hb_055235_020 Hb_000563_420--Hb_000115_280 Hb_000318_120 Hb_000318_120 Hb_000563_420--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_000563_420--Hb_007044_110 Hb_000115_280--Hb_031284_010 Hb_003186_020 Hb_003186_020 Hb_000115_280--Hb_003186_020 Hb_000390_230 Hb_000390_230 Hb_000115_280--Hb_000390_230 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000115_280--Hb_000457_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2196 15.907 21.0002 10.1676 22.0776 18.0176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3823 11.4027 12.8937 18.2679 26.6348

CAGE analysis