Hb_000103_570

Information

Type -
Description -
Location Contig103: 464909-471753
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15950g
description POPTRDRAFT_832826; pyruvate phosphotransferase family protein
nr
ID XP_012069735.1
description PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
swissprot
ID Q43117
description Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1
trembl
ID A0A067KVP9
description Pyruvate kinase OS=Jatropha curcas GN=JCGZ_02254 PE=3 SV=1
Gene Ontology
ID GO:0009507
description pyruvate kinase isozyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01249: 464962-471739
cDNA
(Sanger)
(ID:Location)		 029_N11.ab1: 464962-465439

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_570 0.0 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
2 Hb_004800_180 0.0575437015 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
3 Hb_001221_180 0.077090566 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_004064_050 0.0779267598 - - Structural maintenance of chromosome, putative [Ricinus communis]
5 Hb_000181_100 0.0784816505 - - PREDICTED: protein starmaker [Jatropha curcas]
6 Hb_001723_140 0.0805856746 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
7 Hb_000523_080 0.0831322958 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
8 Hb_088144_020 0.0832554424 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
9 Hb_002475_040 0.0854551303 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
10 Hb_085742_010 0.0862039061 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
11 Hb_000879_040 0.0869061727 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
12 Hb_128548_010 0.0885831591 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003943_020 0.089132078 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
14 Hb_028872_070 0.0910470741 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
15 Hb_001171_030 0.0922025517 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
16 Hb_004096_190 0.0934554779 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_001008_050 0.0939410598 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
18 Hb_001935_160 0.0939534324 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
19 Hb_000011_270 0.0949117551 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
20 Hb_000320_470 0.0969819513 - - calcium-dependent protein kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000103_570 Hb_000103_570 Hb_004800_180 Hb_004800_180 Hb_000103_570--Hb_004800_180 Hb_001221_180 Hb_001221_180 Hb_000103_570--Hb_001221_180 Hb_004064_050 Hb_004064_050 Hb_000103_570--Hb_004064_050 Hb_000181_100 Hb_000181_100 Hb_000103_570--Hb_000181_100 Hb_001723_140 Hb_001723_140 Hb_000103_570--Hb_001723_140 Hb_000523_080 Hb_000523_080 Hb_000103_570--Hb_000523_080 Hb_004800_180--Hb_000181_100 Hb_000864_030 Hb_000864_030 Hb_004800_180--Hb_000864_030 Hb_000563_420 Hb_000563_420 Hb_004800_180--Hb_000563_420 Hb_000665_120 Hb_000665_120 Hb_004800_180--Hb_000665_120 Hb_000679_020 Hb_000679_020 Hb_004800_180--Hb_000679_020 Hb_002357_070 Hb_002357_070 Hb_001221_180--Hb_002357_070 Hb_000011_270 Hb_000011_270 Hb_001221_180--Hb_000011_270 Hb_019840_030 Hb_019840_030 Hb_001221_180--Hb_019840_030 Hb_060980_010 Hb_060980_010 Hb_001221_180--Hb_060980_010 Hb_003093_040 Hb_003093_040 Hb_001221_180--Hb_003093_040 Hb_000568_050 Hb_000568_050 Hb_001221_180--Hb_000568_050 Hb_002475_040 Hb_002475_040 Hb_004064_050--Hb_002475_040 Hb_158092_080 Hb_158092_080 Hb_004064_050--Hb_158092_080 Hb_000243_130 Hb_000243_130 Hb_004064_050--Hb_000243_130 Hb_005402_040 Hb_005402_040 Hb_004064_050--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050 Hb_000320_470 Hb_000320_470 Hb_000181_100--Hb_000320_470 Hb_001008_070 Hb_001008_070 Hb_000181_100--Hb_001008_070 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_026053_040 Hb_026053_040 Hb_000181_100--Hb_026053_040 Hb_031091_020 Hb_031091_020 Hb_000181_100--Hb_031091_020 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_128548_010 Hb_128548_010 Hb_000523_080--Hb_128548_010 Hb_003943_020 Hb_003943_020 Hb_000523_080--Hb_003943_020 Hb_007929_080 Hb_007929_080 Hb_000523_080--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_000523_080--Hb_009771_110 Hb_000523_080--Hb_001723_140 Hb_000523_080--Hb_013358_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.367 49.4929 65.2328 36.6651 45.0878 41.4218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4032 12.1905 26.7935 64.9334 63.112

CAGE analysis