Hb_000320_470

Information

Type -
Description -
Location Contig320: 360699-366568
Sequence    

Annotation

kegg
ID rcu:RCOM_0904730
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID AIO04122.1
description calcium-dependent protein kinase [Hevea brasiliensis]
swissprot
ID Q9ZSA2
description Calcium-dependent protein kinase 21 OS=Arabidopsis thaliana GN=CPK21 PE=1 SV=1
trembl
ID A0A088S5C2
description Calcium-dependent protein kinase OS=Hevea brasiliensis GN=CDPK PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33844: 360709-366448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_470 0.0 - - calcium-dependent protein kinase [Hevea brasiliensis]
2 Hb_000181_100 0.0541401708 - - PREDICTED: protein starmaker [Jatropha curcas]
3 Hb_026053_040 0.0619218147 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001008_050 0.0690903399 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
5 Hb_001008_070 0.0710543344 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
6 Hb_031091_020 0.0757106073 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
7 Hb_089246_010 0.075904175 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
8 Hb_000568_050 0.0760029149 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
9 Hb_013405_080 0.0765493435 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
10 Hb_007035_040 0.0766182492 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
11 Hb_000033_110 0.0787804389 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
12 Hb_012055_110 0.0812111212 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
13 Hb_009252_040 0.0816042116 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
14 Hb_000684_350 0.0853027394 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
15 Hb_017469_110 0.0871513824 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
16 Hb_004800_180 0.0875211207 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
17 Hb_005250_010 0.0876018713 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
18 Hb_003124_100 0.0883967363 - - -
19 Hb_000826_070 0.0886180896 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002027_080 0.0901389307 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_470 Hb_000320_470 Hb_000181_100 Hb_000181_100 Hb_000320_470--Hb_000181_100 Hb_026053_040 Hb_026053_040 Hb_000320_470--Hb_026053_040 Hb_001008_050 Hb_001008_050 Hb_000320_470--Hb_001008_050 Hb_001008_070 Hb_001008_070 Hb_000320_470--Hb_001008_070 Hb_031091_020 Hb_031091_020 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010 Hb_004800_180 Hb_004800_180 Hb_000181_100--Hb_004800_180 Hb_000181_100--Hb_001008_070 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_000181_100--Hb_026053_040 Hb_000181_100--Hb_031091_020 Hb_017469_110 Hb_017469_110 Hb_026053_040--Hb_017469_110 Hb_026053_040--Hb_001008_070 Hb_000033_110 Hb_000033_110 Hb_026053_040--Hb_000033_110 Hb_013405_080 Hb_013405_080 Hb_026053_040--Hb_013405_080 Hb_001008_050--Hb_000181_100 Hb_002391_050 Hb_002391_050 Hb_001008_050--Hb_002391_050 Hb_001935_160 Hb_001935_160 Hb_001008_050--Hb_001935_160 Hb_001008_050--Hb_001008_070 Hb_001008_050--Hb_089246_010 Hb_002581_010 Hb_002581_010 Hb_001008_070--Hb_002581_010 Hb_001008_070--Hb_017469_110 Hb_000795_040 Hb_000795_040 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_002027_080 Hb_002027_080 Hb_031091_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_031091_020--Hb_001518_080 Hb_003186_020 Hb_003186_020 Hb_031091_020--Hb_003186_020 Hb_000635_090 Hb_000635_090 Hb_031091_020--Hb_000635_090 Hb_089246_010--Hb_001008_070 Hb_089246_010--Hb_000181_100 Hb_089246_010--Hb_031091_020 Hb_000022_190 Hb_000022_190 Hb_089246_010--Hb_000022_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0548 22.426 27.9739 21.442 18.801 23.0395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8421 9.0582 12.3181 24.4325 46.6069

CAGE analysis