Hb_000033_110

Information

Type -
Description -
Location Contig33: 206429-215002
Sequence    

Annotation

kegg
ID rcu:RCOM_0211390
description hypothetical protein
nr
ID KDP29540.1
description hypothetical protein JCGZ_19253 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KB94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19253 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000033_110 0.0 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
2 Hb_013405_080 0.0716320524 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
3 Hb_009252_040 0.0746409432 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
4 Hb_000320_470 0.0787804389 - - calcium-dependent protein kinase [Hevea brasiliensis]
5 Hb_004003_040 0.080335506 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_026053_040 0.0803714867 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000015_100 0.0815279529 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
8 Hb_003020_030 0.0815786799 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
9 Hb_000331_560 0.0845604347 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
10 Hb_002328_040 0.087302981 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
11 Hb_005250_010 0.0875942728 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
12 Hb_001660_120 0.0883453074 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
13 Hb_000679_020 0.0885701639 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
14 Hb_000181_240 0.0910173516 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
15 Hb_001790_080 0.0914112799 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
16 Hb_018118_010 0.0922018677 - - DNA polymerase I, putative [Ricinus communis]
17 Hb_002233_130 0.0924260897 - - transporter, putative [Ricinus communis]
18 Hb_001623_280 0.0938840843 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
19 Hb_000815_170 0.093992816 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
20 Hb_002027_080 0.0942981871 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]

Gene co-expression network

sample Hb_000033_110 Hb_000033_110 Hb_013405_080 Hb_013405_080 Hb_000033_110--Hb_013405_080 Hb_009252_040 Hb_009252_040 Hb_000033_110--Hb_009252_040 Hb_000320_470 Hb_000320_470 Hb_000033_110--Hb_000320_470 Hb_004003_040 Hb_004003_040 Hb_000033_110--Hb_004003_040 Hb_026053_040 Hb_026053_040 Hb_000033_110--Hb_026053_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100 Hb_001660_120 Hb_001660_120 Hb_013405_080--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_013405_080--Hb_025477_050 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_005250_010 Hb_005250_010 Hb_013405_080--Hb_005250_010 Hb_013405_080--Hb_000320_470 Hb_000731_010 Hb_000731_010 Hb_009252_040--Hb_000731_010 Hb_000749_090 Hb_000749_090 Hb_009252_040--Hb_000749_090 Hb_018118_010 Hb_018118_010 Hb_009252_040--Hb_018118_010 Hb_009252_040--Hb_013405_080 Hb_000331_560 Hb_000331_560 Hb_009252_040--Hb_000331_560 Hb_000181_100 Hb_000181_100 Hb_000320_470--Hb_000181_100 Hb_000320_470--Hb_026053_040 Hb_001008_050 Hb_001008_050 Hb_000320_470--Hb_001008_050 Hb_001008_070 Hb_001008_070 Hb_000320_470--Hb_001008_070 Hb_031091_020 Hb_031091_020 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010 Hb_000346_060 Hb_000346_060 Hb_004003_040--Hb_000346_060 Hb_002027_080 Hb_002027_080 Hb_004003_040--Hb_002027_080 Hb_000441_090 Hb_000441_090 Hb_004003_040--Hb_000441_090 Hb_000193_330 Hb_000193_330 Hb_004003_040--Hb_000193_330 Hb_000797_040 Hb_000797_040 Hb_004003_040--Hb_000797_040 Hb_004003_040--Hb_000731_010 Hb_017469_110 Hb_017469_110 Hb_026053_040--Hb_017469_110 Hb_026053_040--Hb_000181_100 Hb_026053_040--Hb_001008_070 Hb_026053_040--Hb_013405_080 Hb_000948_170 Hb_000948_170 Hb_000015_100--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_000015_100--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_000015_100--Hb_031284_070 Hb_000816_100 Hb_000816_100 Hb_000015_100--Hb_000816_100 Hb_008206_060 Hb_008206_060 Hb_000015_100--Hb_008206_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00924 4.69734 6.61628 4.73127 6.46873 7.09212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14084 3.16988 4.49686 5.2436 13.9355

CAGE analysis