Hb_000331_560

Information

Type transcription factor
Description TF Family: C2H2
Location Contig331: 450940-459802
Sequence    

Annotation

kegg
ID rcu:RCOM_1507500
description nucleic acid binding protein, putative
nr
ID XP_012079921.1
description PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
swissprot
ID Q9STM3
description Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1
trembl
ID B9RAP0
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1507500 PE=4 SV=1
Gene Ontology
ID GO:0003676
description lysine-specific demethylase ref6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34814: 450761-454913 , PASA_asmbl_34816: 455038-459418 , PASA_asmbl_34817: 460747-466165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_560 0.0 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
2 Hb_002600_060 0.0529647632 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
3 Hb_003203_030 0.0624285146 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
4 Hb_018118_010 0.0683943546 - - DNA polymerase I, putative [Ricinus communis]
5 Hb_003506_050 0.077173194 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000300_120 0.0810828029 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
7 Hb_009252_040 0.0811194692 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
8 Hb_004003_040 0.0815958814 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_000731_010 0.0822253774 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
10 Hb_000925_090 0.0826396342 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
11 Hb_001259_020 0.0826947906 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
12 Hb_000033_110 0.0845604347 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
13 Hb_017966_020 0.0860208523 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
14 Hb_000608_300 0.087391114 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
15 Hb_002328_040 0.0893360866 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
16 Hb_000083_070 0.0909332747 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
17 Hb_012053_090 0.0910432471 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
18 Hb_007545_130 0.0917143352 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
19 Hb_002631_140 0.0919450119 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
20 Hb_006295_020 0.0928735469 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_560 Hb_000331_560 Hb_002600_060 Hb_002600_060 Hb_000331_560--Hb_002600_060 Hb_003203_030 Hb_003203_030 Hb_000331_560--Hb_003203_030 Hb_018118_010 Hb_018118_010 Hb_000331_560--Hb_018118_010 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_009252_040 Hb_009252_040 Hb_000331_560--Hb_009252_040 Hb_000925_090 Hb_000925_090 Hb_002600_060--Hb_000925_090 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_003203_030--Hb_018118_010 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_006816_430 Hb_006816_430 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040 Hb_007545_130 Hb_007545_130 Hb_003506_050--Hb_007545_130 Hb_003506_050--Hb_002600_060 Hb_003506_050--Hb_000925_090 Hb_006618_050 Hb_006618_050 Hb_003506_050--Hb_006618_050 Hb_005250_030 Hb_005250_030 Hb_003506_050--Hb_005250_030 Hb_000300_120--Hb_018118_010 Hb_000041_090 Hb_000041_090 Hb_000300_120--Hb_000041_090 Hb_006295_020 Hb_006295_020 Hb_000300_120--Hb_006295_020 Hb_000300_120--Hb_003203_030 Hb_000816_100 Hb_000816_100 Hb_000300_120--Hb_000816_100 Hb_000731_010 Hb_000731_010 Hb_009252_040--Hb_000731_010 Hb_000033_110 Hb_000033_110 Hb_009252_040--Hb_000033_110 Hb_000749_090 Hb_000749_090 Hb_009252_040--Hb_000749_090 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.53851 6.16701 3.78437 3.80845 5.27069 6.15357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71819 2.22266 3.18145 3.77865 10.0889

CAGE analysis