Hb_005211_020

Information

Type -
Description -
Location Contig5211: 8823-16499
Sequence    

Annotation

kegg
ID rcu:RCOM_0353130
description prp4, putative (EC:2.7.12.1)
nr
ID XP_012082070.1
description PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
swissprot
ID Q08DZ2
description Serine/threonine-protein kinase PRP4 homolog OS=Bos taurus GN=PRPF4B PE=2 SV=1
trembl
ID A0A067JZT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18313 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase prpf4b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46742: 8994-10995 , PASA_asmbl_46743: 9092-9555 , PASA_asmbl_46745: 16448-16831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_020 0.0 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
2 Hb_002600_060 0.0667850467 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
3 Hb_000826_070 0.069989394 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002973_110 0.0747020576 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000608_300 0.0749517768 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
6 Hb_013459_020 0.0758988276 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
7 Hb_000925_090 0.0805028011 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
8 Hb_000363_300 0.0808613052 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
9 Hb_065408_010 0.0814684379 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
10 Hb_007545_130 0.0816252982 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
11 Hb_026053_040 0.0826119324 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004306_030 0.0837599919 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
13 Hb_000684_350 0.0838125207 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
14 Hb_002233_130 0.086344189 - - transporter, putative [Ricinus communis]
15 Hb_001244_150 0.0870519953 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
16 Hb_000664_120 0.088329554 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
17 Hb_017469_110 0.0886140759 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
18 Hb_012244_020 0.0887210063 - - calpain, putative [Ricinus communis]
19 Hb_000568_050 0.08914434 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
20 Hb_012022_060 0.0912001777 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005211_020 Hb_005211_020 Hb_002600_060 Hb_002600_060 Hb_005211_020--Hb_002600_060 Hb_000826_070 Hb_000826_070 Hb_005211_020--Hb_000826_070 Hb_002973_110 Hb_002973_110 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_013459_020 Hb_013459_020 Hb_005211_020--Hb_013459_020 Hb_000925_090 Hb_000925_090 Hb_005211_020--Hb_000925_090 Hb_000331_560 Hb_000331_560 Hb_002600_060--Hb_000331_560 Hb_002600_060--Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_001999_140 Hb_001999_140 Hb_000826_070--Hb_001999_140 Hb_000826_070--Hb_013459_020 Hb_000664_120 Hb_000664_120 Hb_000826_070--Hb_000664_120 Hb_000568_050 Hb_000568_050 Hb_000826_070--Hb_000568_050 Hb_012055_110 Hb_012055_110 Hb_000826_070--Hb_012055_110 Hb_002973_110--Hb_013459_020 Hb_013749_050 Hb_013749_050 Hb_002973_110--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_002973_110--Hb_007012_030 Hb_001472_160 Hb_001472_160 Hb_002973_110--Hb_001472_160 Hb_002600_070 Hb_002600_070 Hb_002973_110--Hb_002600_070 Hb_004306_030 Hb_004306_030 Hb_000608_300--Hb_004306_030 Hb_001789_040 Hb_001789_040 Hb_000608_300--Hb_001789_040 Hb_000608_300--Hb_000568_050 Hb_000608_300--Hb_002600_060 Hb_000608_300--Hb_012055_110 Hb_017469_110 Hb_017469_110 Hb_013459_020--Hb_017469_110 Hb_011174_020 Hb_011174_020 Hb_013459_020--Hb_011174_020 Hb_013459_020--Hb_001999_140 Hb_001008_070 Hb_001008_070 Hb_013459_020--Hb_001008_070 Hb_000925_090--Hb_001133_030 Hb_012244_020 Hb_012244_020 Hb_000925_090--Hb_012244_020 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.81496 14.7191 10.7399 9.17815 11.5708 9.2437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27695 4.68539 4.50488 11.5343 26.5031

CAGE analysis