Hb_001726_100

Information

Type transcription factor
Description TF Family: C3H
Location Contig1726: 141333-158408
Sequence    

Annotation

kegg
ID cit:102630078
description zinc finger CCCH domain-containing protein 19-like
nr
ID XP_012084452.1
description PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
swissprot
ID Q9SIV5
description Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3
trembl
ID A0A067JUK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19651 PE=4 SV=1
Gene Ontology
ID GO:0016740
description zinc finger ccch domain-containing protein 19 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16315: 142122-142329 , PASA_asmbl_16316: 156310-156502 , PASA_asmbl_16317: 95788-157105 , PASA_asmbl_16318: 147394-153866 , PASA_asmbl_16323: 155615-156632 , PASA_asmbl_16324: 97680-147325 , PASA_asmbl_16330: 95963-142836
cDNA
(Sanger)
(ID:Location)		 005_L09.ab1: 157478-158277 , 016_G02.ab1: 157511-158277 , 053_C21.ab1: 157507-158277

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001726_100 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
2 Hb_007120_060 0.067578617 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
3 Hb_001726_050 0.068549002 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
4 Hb_000925_090 0.0694748473 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
5 Hb_000363_300 0.0713894855 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
6 Hb_000656_060 0.0763850902 - - DNA binding protein, putative [Ricinus communis]
7 Hb_012244_020 0.0790886926 - - calpain, putative [Ricinus communis]
8 Hb_065408_010 0.0836538086 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
9 Hb_005186_040 0.0859996876 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
10 Hb_000110_270 0.0860379986 - - prp4, putative [Ricinus communis]
11 Hb_001133_030 0.0872782823 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
12 Hb_001124_050 0.0886398626 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
13 Hb_004306_120 0.0888151042 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000856_070 0.0896880598 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
15 Hb_006031_010 0.0905156338 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
16 Hb_011021_050 0.0906992995 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
17 Hb_009486_090 0.0918379801 - - RNA binding protein, putative [Ricinus communis]
18 Hb_001377_100 0.0922113123 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
19 Hb_007545_130 0.0929553992 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
20 Hb_000589_380 0.0936465015 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001726_100 Hb_001726_100 Hb_007120_060 Hb_007120_060 Hb_001726_100--Hb_007120_060 Hb_001726_050 Hb_001726_050 Hb_001726_100--Hb_001726_050 Hb_000925_090 Hb_000925_090 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_001726_100--Hb_012244_020 Hb_065408_010 Hb_065408_010 Hb_007120_060--Hb_065408_010 Hb_007120_060--Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_007120_060--Hb_001133_030 Hb_001085_030 Hb_001085_030 Hb_007120_060--Hb_001085_030 Hb_000003_410 Hb_000003_410 Hb_007120_060--Hb_000003_410 Hb_001726_050--Hb_000656_060 Hb_005488_170 Hb_005488_170 Hb_001726_050--Hb_005488_170 Hb_099270_030 Hb_099270_030 Hb_001726_050--Hb_099270_030 Hb_005186_040 Hb_005186_040 Hb_001726_050--Hb_005186_040 Hb_002909_120 Hb_002909_120 Hb_001726_050--Hb_002909_120 Hb_000925_090--Hb_001133_030 Hb_000925_090--Hb_012244_020 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_000363_300--Hb_012244_020 Hb_011174_020 Hb_011174_020 Hb_000363_300--Hb_011174_020 Hb_001377_100 Hb_001377_100 Hb_000363_300--Hb_001377_100 Hb_006031_010 Hb_006031_010 Hb_000363_300--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_000363_300--Hb_135572_010 Hb_012022_060 Hb_012022_060 Hb_000363_300--Hb_012022_060 Hb_000656_060--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_000656_060--Hb_011021_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_000856_070 Hb_000856_070 Hb_000656_060--Hb_000856_070 Hb_012244_020--Hb_005186_040 Hb_012244_020--Hb_011174_020 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86797 17.5508 6.52266 6.82246 7.20463 9.15086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78104 4.76042 5.72709 14.7431 24.9566

CAGE analysis