Hb_012022_060

Information

Type -
Description -
Location Contig12022: 80549-95822
Sequence    

Annotation

kegg
ID rcu:RCOM_0643400
description symplekin, putative
nr
ID XP_012087849.1
description PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25010 PE=4 SV=1
Gene Ontology
ID GO:0005488
description heat repeat-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06267: 67968-84089 , PASA_asmbl_06269: 70016-84089 , PASA_asmbl_06270: 84411-92084 , PASA_asmbl_06271: 92386-92635 , PASA_asmbl_06272: 92642-95475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_060 0.0 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
2 Hb_000363_300 0.0682103583 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
3 Hb_000934_210 0.0747879508 - - suppressor of ty, putative [Ricinus communis]
4 Hb_013459_020 0.0774245391 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
5 Hb_002357_070 0.0796402536 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
6 Hb_000009_030 0.0830295266 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
7 Hb_000664_120 0.0841611497 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
8 Hb_000811_060 0.0850059665 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
9 Hb_160608_010 0.0867071187 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
10 Hb_001999_140 0.0873427496 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_002078_470 0.0875083304 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
12 Hb_004306_120 0.0875288299 - - DNA binding protein, putative [Ricinus communis]
13 Hb_006478_030 0.0881814444 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
14 Hb_048476_080 0.0882555017 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
15 Hb_000958_050 0.0889133209 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
16 Hb_000003_410 0.0889189487 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
17 Hb_012244_020 0.0900608292 - - calpain, putative [Ricinus communis]
18 Hb_013749_050 0.0907960054 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
19 Hb_005211_020 0.0912001777 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
20 Hb_005701_050 0.0914115499 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_012022_060 Hb_012022_060 Hb_000363_300 Hb_000363_300 Hb_012022_060--Hb_000363_300 Hb_000934_210 Hb_000934_210 Hb_012022_060--Hb_000934_210 Hb_013459_020 Hb_013459_020 Hb_012022_060--Hb_013459_020 Hb_002357_070 Hb_002357_070 Hb_012022_060--Hb_002357_070 Hb_000009_030 Hb_000009_030 Hb_012022_060--Hb_000009_030 Hb_000664_120 Hb_000664_120 Hb_012022_060--Hb_000664_120 Hb_012244_020 Hb_012244_020 Hb_000363_300--Hb_012244_020 Hb_011174_020 Hb_011174_020 Hb_000363_300--Hb_011174_020 Hb_001377_100 Hb_001377_100 Hb_000363_300--Hb_001377_100 Hb_006031_010 Hb_006031_010 Hb_000363_300--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_000363_300--Hb_135572_010 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_017469_110 Hb_017469_110 Hb_013459_020--Hb_017469_110 Hb_000826_070 Hb_000826_070 Hb_013459_020--Hb_000826_070 Hb_013459_020--Hb_011174_020 Hb_002973_110 Hb_002973_110 Hb_013459_020--Hb_002973_110 Hb_001999_140 Hb_001999_140 Hb_013459_020--Hb_001999_140 Hb_001008_070 Hb_001008_070 Hb_013459_020--Hb_001008_070 Hb_007245_020 Hb_007245_020 Hb_002357_070--Hb_007245_020 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_002357_070--Hb_123531_010 Hb_000318_150 Hb_000318_150 Hb_002357_070--Hb_000318_150 Hb_012055_110 Hb_012055_110 Hb_002357_070--Hb_012055_110 Hb_000976_110 Hb_000976_110 Hb_000009_030--Hb_000976_110 Hb_005489_040 Hb_005489_040 Hb_000009_030--Hb_005489_040 Hb_000009_030--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000009_030--Hb_000787_200 Hb_160608_010 Hb_160608_010 Hb_000009_030--Hb_160608_010 Hb_001587_030 Hb_001587_030 Hb_000009_030--Hb_001587_030 Hb_005701_050 Hb_005701_050 Hb_000664_120--Hb_005701_050 Hb_000664_120--Hb_000826_070 Hb_000664_120--Hb_001999_140 Hb_000664_120--Hb_000934_210 Hb_000035_100 Hb_000035_100 Hb_000664_120--Hb_000035_100 Hb_002461_020 Hb_002461_020 Hb_000664_120--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1962 4.26653 3.5292 2.74871 2.38765 2.44488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40269 1.21611 1.92021 4.19221 6.12657

CAGE analysis