Hb_002357_070

Information

Type transcription factor
Description TF Family: PHD
Location Contig2357: 80492-122461
Sequence    

Annotation

kegg
ID rcu:RCOM_1129520
description hypothetical protein
nr
ID XP_012084559.1
description PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
swissprot
ID Q5BJL5
description Protein strawberry notch homolog 1 OS=Rattus norvegicus GN=Sbno1 PE=2 SV=2
trembl
ID A0A067JU52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20832 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein strawberry notch isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24643: 88231-88530 , PASA_asmbl_24644: 65648-118033 , PASA_asmbl_24645: 65936-85441 , PASA_asmbl_24646: 85534-90255 , PASA_asmbl_24647: 118478-122439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002357_070 0.0 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
2 Hb_007245_020 0.046028484 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
3 Hb_001221_180 0.0529345033 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_123531_010 0.0562044735 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
5 Hb_000934_210 0.0569379347 - - suppressor of ty, putative [Ricinus communis]
6 Hb_000318_150 0.0569405759 - - RNA-binding protein Nova-1, putative [Ricinus communis]
7 Hb_012055_110 0.0618815261 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
8 Hb_060980_010 0.0622772097 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
9 Hb_006478_030 0.0643087583 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
10 Hb_011174_020 0.0659197241 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
11 Hb_033312_130 0.0663942345 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
12 Hb_006031_010 0.0669402206 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
13 Hb_000011_270 0.0684071079 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
14 Hb_002007_110 0.0686589945 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
15 Hb_027506_010 0.0693343688 - - PREDICTED: cullin-4 [Jatropha curcas]
16 Hb_000996_020 0.0693813626 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
17 Hb_001925_060 0.0721205392 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
18 Hb_005701_050 0.0723614063 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
19 Hb_000270_170 0.0725822473 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
20 Hb_000568_050 0.0729589396 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002357_070 Hb_002357_070 Hb_007245_020 Hb_007245_020 Hb_002357_070--Hb_007245_020 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_123531_010 Hb_123531_010 Hb_002357_070--Hb_123531_010 Hb_000934_210 Hb_000934_210 Hb_002357_070--Hb_000934_210 Hb_000318_150 Hb_000318_150 Hb_002357_070--Hb_000318_150 Hb_012055_110 Hb_012055_110 Hb_002357_070--Hb_012055_110 Hb_007245_020--Hb_123531_010 Hb_006478_030 Hb_006478_030 Hb_007245_020--Hb_006478_030 Hb_000172_340 Hb_000172_340 Hb_007245_020--Hb_000172_340 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290 Hb_000011_270 Hb_000011_270 Hb_001221_180--Hb_000011_270 Hb_019840_030 Hb_019840_030 Hb_001221_180--Hb_019840_030 Hb_001221_180--Hb_060980_010 Hb_003093_040 Hb_003093_040 Hb_001221_180--Hb_003093_040 Hb_000568_050 Hb_000568_050 Hb_001221_180--Hb_000568_050 Hb_002007_110 Hb_002007_110 Hb_123531_010--Hb_002007_110 Hb_123531_010--Hb_000934_210 Hb_000331_580 Hb_000331_580 Hb_123531_010--Hb_000331_580 Hb_123531_010--Hb_000172_340 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_000934_210--Hb_002007_110 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_000960_080 Hb_000960_080 Hb_000318_150--Hb_000960_080 Hb_000787_200 Hb_000787_200 Hb_000318_150--Hb_000787_200 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000270_170 Hb_000270_170 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_012055_110--Hb_000958_050 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95861 10.7786 8.21587 7.97351 5.54142 6.0557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88598 3.90912 4.09048 11.4946 11.529

CAGE analysis