Hb_000172_340

Information

Type -
Description -
Location Contig172: 388857-394335
Sequence    

Annotation

kegg
ID sly:101261327
description uncharacterized LOC101261327
nr
ID XP_004238513.1
description PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID W1PLI2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00017p00185020 PE=4 SV=1
Gene Ontology
ID GO:0006259
description apoptotic chromatin condensation inducer in the nucleus

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16147: 388709-394300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_340 0.0 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
2 Hb_001904_030 0.0486851956 - - PREDICTED: importin-5 [Jatropha curcas]
3 Hb_005832_010 0.0565852473 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
4 Hb_002005_030 0.0578141849 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
5 Hb_123531_010 0.0595116897 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
6 Hb_007245_020 0.0628083587 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
7 Hb_000066_150 0.064982908 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
8 Hb_001341_160 0.0666396199 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
9 Hb_002007_110 0.066943092 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
10 Hb_004223_160 0.0691669812 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
11 Hb_000331_580 0.0702075696 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
12 Hb_000020_160 0.0723064902 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
13 Hb_000479_240 0.0736706331 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
14 Hb_003604_050 0.0738688938 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
15 Hb_000428_030 0.0741383793 - - hypothetical protein RCOM_1520720 [Ricinus communis]
16 Hb_000358_100 0.0741421127 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
17 Hb_000010_420 0.0757375675 - - Callose synthase 10 [Morus notabilis]
18 Hb_000358_220 0.0766709209 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
19 Hb_012055_110 0.0772383251 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
20 Hb_002357_070 0.0777420692 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_340 Hb_000172_340 Hb_001904_030 Hb_001904_030 Hb_000172_340--Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_123531_010 Hb_123531_010 Hb_000172_340--Hb_123531_010 Hb_007245_020 Hb_007245_020 Hb_000172_340--Hb_007245_020 Hb_000066_150 Hb_000066_150 Hb_000172_340--Hb_000066_150 Hb_001904_030--Hb_005832_010 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_004223_160 Hb_004223_160 Hb_005832_010--Hb_004223_160 Hb_009476_090 Hb_009476_090 Hb_005832_010--Hb_009476_090 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_001951_170 Hb_001951_170 Hb_005832_010--Hb_001951_170 Hb_006907_140 Hb_006907_140 Hb_002005_030--Hb_006907_140 Hb_001341_160 Hb_001341_160 Hb_002005_030--Hb_001341_160 Hb_000010_420 Hb_000010_420 Hb_002005_030--Hb_000010_420 Hb_002005_030--Hb_001904_030 Hb_002005_030--Hb_007245_020 Hb_123531_010--Hb_002007_110 Hb_123531_010--Hb_007245_020 Hb_000934_210 Hb_000934_210 Hb_123531_010--Hb_000934_210 Hb_000331_580 Hb_000331_580 Hb_123531_010--Hb_000331_580 Hb_002357_070 Hb_002357_070 Hb_123531_010--Hb_002357_070 Hb_007245_020--Hb_002357_070 Hb_006478_030 Hb_006478_030 Hb_007245_020--Hb_006478_030 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.81265 28.3497 16.1713 19.9359 13.6474 16.0881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.43171 5.70312 6.08254 21.7609 22.1419

CAGE analysis