Hb_006907_140

Information

Type -
Description -
Location Contig6907: 86316-93484
Sequence    

Annotation

kegg
ID rcu:RCOM_0902840
description hypothetical protein
nr
ID XP_002518406.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FZ45
description Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1
trembl
ID B9RXD7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0902840 PE=4 SV=1
Gene Ontology
ID GO:0008233
description uncharacterized membrane protein at1g16860-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54328: 86280-92159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002005_030 0.0603576386 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
3 Hb_001414_040 0.0787369559 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
4 Hb_001341_160 0.0803934318 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
5 Hb_000172_340 0.0808872958 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
6 Hb_000010_420 0.0829154451 - - Callose synthase 10 [Morus notabilis]
7 Hb_004645_070 0.0848824461 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
8 Hb_007747_170 0.0862934428 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
9 Hb_000331_580 0.0876007384 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
10 Hb_001259_120 0.0877466322 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
11 Hb_001167_050 0.0879838808 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
12 Hb_003216_090 0.0888037476 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
13 Hb_001646_010 0.0890655842 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
14 Hb_004223_160 0.0893624908 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
15 Hb_044486_040 0.089402041 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
16 Hb_000571_160 0.0910059284 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
17 Hb_003604_050 0.0918251468 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
18 Hb_004109_380 0.0918643133 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
19 Hb_001662_180 0.0931600532 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
20 Hb_000608_230 0.0937246889 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006907_140 Hb_006907_140 Hb_002005_030 Hb_002005_030 Hb_006907_140--Hb_002005_030 Hb_001414_040 Hb_001414_040 Hb_006907_140--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_006907_140--Hb_001341_160 Hb_000172_340 Hb_000172_340 Hb_006907_140--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_006907_140--Hb_000010_420 Hb_004645_070 Hb_004645_070 Hb_006907_140--Hb_004645_070 Hb_002005_030--Hb_000172_340 Hb_002005_030--Hb_001341_160 Hb_002005_030--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_002005_030--Hb_001904_030 Hb_007245_020 Hb_007245_020 Hb_002005_030--Hb_007245_020 Hb_000371_060 Hb_000371_060 Hb_001414_040--Hb_000371_060 Hb_007765_030 Hb_007765_030 Hb_001414_040--Hb_007765_030 Hb_000009_120 Hb_000009_120 Hb_001414_040--Hb_000009_120 Hb_001414_040--Hb_001341_160 Hb_001259_120 Hb_001259_120 Hb_001414_040--Hb_001259_120 Hb_003604_050 Hb_003604_050 Hb_001341_160--Hb_003604_050 Hb_001341_160--Hb_000172_340 Hb_001341_160--Hb_000010_420 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_000172_340--Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_000172_340--Hb_005832_010 Hb_123531_010 Hb_123531_010 Hb_000172_340--Hb_123531_010 Hb_000172_340--Hb_007245_020 Hb_000066_150 Hb_000066_150 Hb_000172_340--Hb_000066_150 Hb_000010_420--Hb_001259_120 Hb_000010_420--Hb_004645_070 Hb_001167_050 Hb_001167_050 Hb_000010_420--Hb_001167_050 Hb_000010_420--Hb_001904_030 Hb_009615_160 Hb_009615_160 Hb_000010_420--Hb_009615_160 Hb_005568_040 Hb_005568_040 Hb_004645_070--Hb_005568_040 Hb_000479_240 Hb_000479_240 Hb_004645_070--Hb_000479_240 Hb_000331_580 Hb_000331_580 Hb_004645_070--Hb_000331_580 Hb_000635_200 Hb_000635_200 Hb_004645_070--Hb_000635_200 Hb_004645_070--Hb_001167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59563 13.7351 5.1383 9.15544 5.71704 7.00577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59665 1.51968 3.22811 11.7759 7.60546

CAGE analysis