Hb_001414_040

Information

Type -
Description -
Location Contig1414: 38949-45643
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13550g
description POPTRDRAFT_820696; RNA-directed RNA Polymerase family protein
nr
ID XP_012072320.1
description PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LQV2
description RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1
trembl
ID B9HJH7
description RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable rna-dependent rna polymerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11161: 36555-45607 , PASA_asmbl_11162: 36547-45623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_040 0.0 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
2 Hb_006907_140 0.0787369559 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000371_060 0.08124374 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
4 Hb_007765_030 0.0814538002 - - PREDICTED: neutral ceramidase [Jatropha curcas]
5 Hb_000009_120 0.0817664262 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
6 Hb_001341_160 0.0836082891 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
7 Hb_001259_120 0.089368909 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
8 Hb_011861_080 0.0943401221 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
9 Hb_015183_100 0.0950461532 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
10 Hb_002005_030 0.0972517465 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
11 Hb_003849_240 0.0977433973 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_000010_420 0.0993125161 - - Callose synthase 10 [Morus notabilis]
13 Hb_002524_020 0.1001000002 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
14 Hb_001167_050 0.1023040448 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
15 Hb_001322_180 0.1025063078 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
16 Hb_000571_160 0.1036100661 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
17 Hb_000080_110 0.1052884707 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
18 Hb_004223_160 0.1064817663 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
19 Hb_001799_190 0.107619504 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
20 Hb_000059_020 0.1078337525 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]

Gene co-expression network

sample Hb_001414_040 Hb_001414_040 Hb_006907_140 Hb_006907_140 Hb_001414_040--Hb_006907_140 Hb_000371_060 Hb_000371_060 Hb_001414_040--Hb_000371_060 Hb_007765_030 Hb_007765_030 Hb_001414_040--Hb_007765_030 Hb_000009_120 Hb_000009_120 Hb_001414_040--Hb_000009_120 Hb_001341_160 Hb_001341_160 Hb_001414_040--Hb_001341_160 Hb_001259_120 Hb_001259_120 Hb_001414_040--Hb_001259_120 Hb_002005_030 Hb_002005_030 Hb_006907_140--Hb_002005_030 Hb_006907_140--Hb_001341_160 Hb_000172_340 Hb_000172_340 Hb_006907_140--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_006907_140--Hb_000010_420 Hb_004645_070 Hb_004645_070 Hb_006907_140--Hb_004645_070 Hb_002524_020 Hb_002524_020 Hb_000371_060--Hb_002524_020 Hb_000371_060--Hb_001259_120 Hb_001195_350 Hb_001195_350 Hb_000371_060--Hb_001195_350 Hb_001257_100 Hb_001257_100 Hb_000371_060--Hb_001257_100 Hb_000059_130 Hb_000059_130 Hb_000371_060--Hb_000059_130 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_003849_240 Hb_003849_240 Hb_000009_120--Hb_003849_240 Hb_002889_020 Hb_002889_020 Hb_000009_120--Hb_002889_020 Hb_005333_050 Hb_005333_050 Hb_000009_120--Hb_005333_050 Hb_006829_100 Hb_006829_100 Hb_000009_120--Hb_006829_100 Hb_000080_110 Hb_000080_110 Hb_000009_120--Hb_000080_110 Hb_003604_050 Hb_003604_050 Hb_001341_160--Hb_003604_050 Hb_001341_160--Hb_000172_340 Hb_001341_160--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_001259_120--Hb_000010_420 Hb_026198_060 Hb_026198_060 Hb_001259_120--Hb_026198_060 Hb_001259_120--Hb_004645_070 Hb_001259_120--Hb_001257_100 Hb_001259_120--Hb_002005_030 Hb_001167_050 Hb_001167_050 Hb_001259_120--Hb_001167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1743 40.458 15.8707 21.0254 11.7443 11.9963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66127 4.30317 8.66961 33.493 15.6001

CAGE analysis