Hb_003849_240

Information

Type -
Description -
Location Contig3849: 180265-183552
Sequence    

Annotation

kegg
ID rcu:RCOM_0793480
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_002530026.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8W4Q3
description Plant intracellular Ras-group-related LRR protein 3 OS=Arabidopsis thaliana GN=PIRL3 PE=2 SV=1
trembl
ID B9SVK7
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0793480 PE=4 SV=1
Gene Ontology
ID GO:0005515
description plant intracellular ras-group-related lrr protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38781: 180428-183122 , PASA_asmbl_38783: 184513-187028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_240 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_000009_120 0.0687556165 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
3 Hb_002005_090 0.0823304809 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001031_090 0.0917938261 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
5 Hb_007765_030 0.0925855815 - - PREDICTED: neutral ceramidase [Jatropha curcas]
6 Hb_000395_220 0.097444813 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
7 Hb_005333_050 0.0974560319 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
8 Hb_006829_100 0.0974847672 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001414_040 0.0977433973 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
10 Hb_007426_140 0.1056829501 - - ornithine aminotransferase, putative [Ricinus communis]
11 Hb_002889_020 0.1057812697 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
12 Hb_000608_230 0.1065635963 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
13 Hb_005048_100 0.106751753 - - secretory carrier membrane protein, putative [Ricinus communis]
14 Hb_000251_040 0.1067577116 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
15 Hb_083799_010 0.1076190701 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001104_110 0.1076478329 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
17 Hb_000823_030 0.1093878009 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
18 Hb_001953_120 0.1096807781 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
19 Hb_000009_330 0.1110385307 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
20 Hb_049436_010 0.1128378262 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]

Gene co-expression network

sample Hb_003849_240 Hb_003849_240 Hb_000009_120 Hb_000009_120 Hb_003849_240--Hb_000009_120 Hb_002005_090 Hb_002005_090 Hb_003849_240--Hb_002005_090 Hb_001031_090 Hb_001031_090 Hb_003849_240--Hb_001031_090 Hb_007765_030 Hb_007765_030 Hb_003849_240--Hb_007765_030 Hb_000395_220 Hb_000395_220 Hb_003849_240--Hb_000395_220 Hb_005333_050 Hb_005333_050 Hb_003849_240--Hb_005333_050 Hb_001414_040 Hb_001414_040 Hb_000009_120--Hb_001414_040 Hb_002889_020 Hb_002889_020 Hb_000009_120--Hb_002889_020 Hb_000009_120--Hb_005333_050 Hb_006829_100 Hb_006829_100 Hb_000009_120--Hb_006829_100 Hb_000080_110 Hb_000080_110 Hb_000009_120--Hb_000080_110 Hb_005048_100 Hb_005048_100 Hb_002005_090--Hb_005048_100 Hb_000823_030 Hb_000823_030 Hb_002005_090--Hb_000823_030 Hb_000069_410 Hb_000069_410 Hb_002005_090--Hb_000069_410 Hb_003058_060 Hb_003058_060 Hb_002005_090--Hb_003058_060 Hb_001575_010 Hb_001575_010 Hb_002005_090--Hb_001575_010 Hb_016734_060 Hb_016734_060 Hb_001031_090--Hb_016734_060 Hb_004109_380 Hb_004109_380 Hb_001031_090--Hb_004109_380 Hb_004223_160 Hb_004223_160 Hb_001031_090--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001031_090--Hb_008948_140 Hb_049436_010 Hb_049436_010 Hb_001031_090--Hb_049436_010 Hb_001031_090--Hb_002889_020 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_007426_140 Hb_007426_140 Hb_000395_220--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_000395_220--Hb_083799_010 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_002046_010 Hb_002046_010 Hb_005333_050--Hb_002046_010 Hb_019840_030 Hb_019840_030 Hb_005333_050--Hb_019840_030 Hb_000022_150 Hb_000022_150 Hb_005333_050--Hb_000022_150 Hb_039946_050 Hb_039946_050 Hb_005333_050--Hb_039946_050 Hb_005333_050--Hb_002889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9749 58.9534 27.1638 25.561 27.814 23.1802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6078 12.4484 14.8342 70.7604 22.8717

CAGE analysis