Hb_002272_170

Information

Type -
Description -
Location Contig2272: 98607-111082
Sequence    

Annotation

kegg
ID cit:102629260
description branched-chain-amino-acid aminotransferase-like protein 1-like
nr
ID XP_012089104.1
description PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
swissprot
ID Q9ASR4
description Branched-chain-amino-acid aminotransferase-like protein 2 OS=Arabidopsis thaliana GN=At5g27410 PE=2 SV=1
trembl
ID A0A067JHW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23379 PE=3 SV=1
Gene Ontology
ID GO:0008483
description branched-chain-amino-acid aminotransferase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23683: 98919-111079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_170 0.0 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
2 Hb_083799_010 0.0654948896 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000251_040 0.0758835919 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
4 Hb_000395_220 0.0915479545 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
5 Hb_000692_160 0.1042176389 - - Transportin 1 isoform 1 [Theobroma cacao]
6 Hb_033772_070 0.1045055697 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
7 Hb_007426_140 0.1068812207 - - ornithine aminotransferase, putative [Ricinus communis]
8 Hb_001160_070 0.1077274471 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
9 Hb_000260_660 0.1084806852 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001004_140 0.1092788864 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
11 Hb_005489_140 0.1112997747 - - PREDICTED: maspardin [Jatropha curcas]
12 Hb_002995_040 0.1124233271 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
13 Hb_000174_140 0.1131366242 - - JHL23J11.8 [Jatropha curcas]
14 Hb_000334_260 0.1167387905 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
15 Hb_005970_010 0.1181777249 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
16 Hb_002596_060 0.1186761851 - - conserved hypothetical protein [Ricinus communis]
17 Hb_075315_010 0.1196217656 - - ornithine aminotransferase [Camellia sinensis]
18 Hb_003906_170 0.1203917727 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_107298_010 0.1207384633 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
20 Hb_012180_010 0.1213287807 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]

Gene co-expression network

sample Hb_002272_170 Hb_002272_170 Hb_083799_010 Hb_083799_010 Hb_002272_170--Hb_083799_010 Hb_000251_040 Hb_000251_040 Hb_002272_170--Hb_000251_040 Hb_000395_220 Hb_000395_220 Hb_002272_170--Hb_000395_220 Hb_000692_160 Hb_000692_160 Hb_002272_170--Hb_000692_160 Hb_033772_070 Hb_033772_070 Hb_002272_170--Hb_033772_070 Hb_007426_140 Hb_007426_140 Hb_002272_170--Hb_007426_140 Hb_083799_010--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_000008_090 Hb_000008_090 Hb_000251_040--Hb_000008_090 Hb_000174_140 Hb_000174_140 Hb_000251_040--Hb_000174_140 Hb_000251_040--Hb_083799_010 Hb_005180_010 Hb_005180_010 Hb_000251_040--Hb_005180_010 Hb_001004_140 Hb_001004_140 Hb_000251_040--Hb_001004_140 Hb_000395_220--Hb_007426_140 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_000692_160--Hb_005081_020 Hb_003906_170 Hb_003906_170 Hb_000692_160--Hb_003906_170 Hb_000692_160--Hb_083799_010 Hb_001009_080 Hb_001009_080 Hb_000692_160--Hb_001009_080 Hb_000692_160--Hb_075315_010 Hb_033772_070--Hb_005180_010 Hb_002836_100 Hb_002836_100 Hb_033772_070--Hb_002836_100 Hb_033772_070--Hb_000395_220 Hb_033772_070--Hb_000251_040 Hb_033772_070--Hb_007426_140 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.78383 14.5554 9.15408 19.1107 7.24722 6.74872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.49612 3.4937 4.8933 24.3923 5.26267

CAGE analysis